View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_low_20 (Length: 303)
Name: NF18228_low_20
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_low_20 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 8194938 - 8194644
Alignment:
| Q |
9 |
gacatcatcagagtatgtcttctttgccttcacccaaacgtcgtaacatgtcttgatcctccggcgttcaggccatccaagccttcagaagctgcatctt |
108 |
Q |
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| T |
8194938 |
gacatcattagagtatgtcttctttgccttcaccaaaacgtcgtaacatgtcttgatcctccggcgtttaggccatccaagccttcagaagctgcatctt |
8194839 |
T |
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| Q |
109 |
atggttccaaatctgtcaaaagtgtctaccttagagtgtgagtcgtgtcagttcgggaaacatactaggagtttctttcccgatagagtcaataaaagag |
208 |
Q |
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| T |
8194838 |
atggttccaaatctgtcaaaagtgtctaccttagagtgtgagtcgtgtcagttcgggaaacatactaggagtttctttcccgatagagtcaataaaagag |
8194739 |
T |
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| Q |
209 |
ctgcgtctccttttgctttagttcattctgatatttggggtcctagccgtgttgtttcatgtttgggttatcaatattttgttacttttattgat |
303 |
Q |
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| T |
8194738 |
ctgcgtctccttttgctttagttcattctgatatttggggtcctagccgtgttgtttcatgtttgggttatcaatattttgttacttttattgat |
8194644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 21501114 - 21501180
Alignment:
| Q |
237 |
tgatatttggggtcctagccgtgttgtttcatgtttgggttatcaatattttgttacttttattgat |
303 |
Q |
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| T |
21501114 |
tgatatttggggtcctagtcgtgttgttgcatgtttgggttatcaatattttgttacttttattgat |
21501180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 6575309 - 6575277
Alignment:
| Q |
229 |
gttcattctgatatttggggtcctagccgtgtt |
261 |
Q |
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| T |
6575309 |
gttcattctgatatttggggtcctagtcgtgtt |
6575277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 303
Target Start/End: Complemental strand, 22163193 - 22162964
Alignment:
| Q |
73 |
cgttcaggccatccaagccttcagaagctgcatcttatggttccaaatctgtcaaaagtgtctaccttagagtgtgagtcgtgtcagttcgggaaacata |
172 |
Q |
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| T |
22163193 |
cgtttaggccatccaagcctttagaagctgcatcttatggttccaaatctgtcaaaagtgtctaccttagagtgtgagtcgtgtcagttcgggaaaaata |
22163094 |
T |
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| Q |
173 |
ctaggagtttctttcccgatagagtcaataaaagagctgcgtctccttttgctttagttcattctgatatttggggtcctagccgtgttgtttcatgttt |
272 |
Q |
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| T |
22163093 |
ataggagtttctttcccgatagagtcaataaaagagttgcgtttccttttgctttagttcattctgatatttggggttctagccgtgttgtttcatgttt |
22162994 |
T |
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| Q |
273 |
gggttatcaatattttgttacttttattgat |
303 |
Q |
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| T |
22162993 |
gggttatcaata-tttgttacttttattgat |
22162964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 22164249 - 22164300
Alignment:
| Q |
9 |
gacatcatcagagtatgtcttctttgccttcacccaaacgtcgtaacatgtc |
60 |
Q |
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| T |
22164249 |
gacatcattagagtgtgtcttctttgccttcacccaaacgtcgtaacatgtc |
22164300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 157 - 303
Target Start/End: Complemental strand, 27822082 - 27821936
Alignment:
| Q |
157 |
cagttcgggaaacatactaggagtttctttcccgatagagtcaataaaagagctgcgtctccttttgctttagttcattctgatatttggggtcctagcc |
256 |
Q |
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| T |
27822082 |
cagttcgggaaacatactaggagtttctttcccggtagagtcaataaaagagctgtgtctccttttgctttagttcattttgatatttggggtcctagtc |
27821983 |
T |
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| Q |
257 |
gtgttgtttcatgtttgggttatcaatattttgttacttttattgat |
303 |
Q |
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| T |
27821982 |
gtgttgtttcatgtttgggttatcaatattttgttacttttattgat |
27821936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 41491255 - 41491166
Alignment:
| Q |
151 |
tcgtgtcagttcgggaaacatactaggagtttctttcccgatagagtcaataaaagagctgcgtctccttttgctttagttcattctgat |
240 |
Q |
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| T |
41491255 |
tcgtgtcagttagggaaacacactcgtagtcattttcccgatcgagtcaataaacgagcatcgtccccttttgctttattccattctgat |
41491166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 6961087 - 6961188
Alignment:
| Q |
102 |
gcatcttatggttccaaatctgtcaaaagtgtctaccttagagtgtgagtcgtgtcagttcgggaaacatactaggagtttctttcccgatagagtcaat |
201 |
Q |
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| T |
6961087 |
gcatcttatggttccgagtctctcaaaagtgtctaccttaaagtgtgagtcatatcagttcggaaaacatacgaggaattccttttgcgatagagtcaat |
6961186 |
T |
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| Q |
202 |
aa |
203 |
Q |
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|| |
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| T |
6961187 |
aa |
6961188 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 12895450 - 12895518
Alignment:
| Q |
194 |
gagtcaataaaagagctgcgtctccttttgctttagttcattctgatatttggggtcctagccgtgttg |
262 |
Q |
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| T |
12895450 |
gagtaaataaaagtgttgcatcaccttttgctttagttcattcagatgtttggggtcctagtcgtgttg |
12895518 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 55253672 - 55253767
Alignment:
| Q |
145 |
tgtgagtcgtgtcagttcgggaaacatactaggagtttctttcccgatagagtcaataaaagagctgcgtctccttttgctttagttcattctgat |
240 |
Q |
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| T |
55253672 |
tgtgagtagtgtcagttagggaaacacactcgtagtcattttcccgatcgagtcaataaacgagcatcggccccttttgctttagtccattctgat |
55253767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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