View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_low_21 (Length: 301)
Name: NF18228_low_21
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 52351858 - 52351573
Alignment:
| Q |
1 |
tcatcacttgggagtttagttcatttgaggtatttggagctttatcatattaaaacaaagaagctccctaactctatttacaacttgcataaattggaaa |
100 |
Q |
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| T |
52351858 |
tcatcacttgggagtttagttcatttgaggtatttggagctttatcatattaaaacaaagaagctccctaactctatttacaacttgcataaattggaaa |
52351759 |
T |
|
| Q |
101 |
tcttgaaactgaaacatttaccggatcttctttgtctaccagaacgtttgacttgcttaaaacatctcagacatcttatcattgaagattgtttttcatt |
200 |
Q |
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| T |
52351758 |
tcttgaaactgaaacatttaccggatcttctttgtctaccagaacgtttgaattgcttaaaacatctcagacatcttatcattgaagattgtttttcatt |
52351659 |
T |
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| Q |
201 |
gtcttgtatgttcccttacattggaagattatcttccctaagaacagtaagtgtatacgtagtcagatcaaagacggggcacaact |
286 |
Q |
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| T |
52351658 |
gtcttgtatgttcccttacattggaagattatcttccctaagaacagtaagtgtatacatagtcagatcaaaaacggggcacaact |
52351573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 252
Target Start/End: Original strand, 30521903 - 30522084
Alignment:
| Q |
71 |
actctatttacaacttgcataaattggaaatcttgaaactgaaacatttaccggatcttctttgtctaccagaacgtttgacttgcttaaaacatctcag |
170 |
Q |
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| T |
30521903 |
actcaatttatagcttgcgtaatttggaaatcttgaaactgaaacatttttctaaacttcgttgtctaccggaacacttgacttgcttacaaaatctcag |
30522002 |
T |
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| Q |
171 |
acatcttatcattgaagattgtttttcattgtcttgtatgttcccttacattggaagattatcttccctaagaacagtaagt |
252 |
Q |
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| T |
30522003 |
acatcttgttattgaaaattgtgatgcattgtcccgtgtgttccctaacattggtaaattatcttccctaagaacattaagt |
30522084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 252
Target Start/End: Original strand, 30562243 - 30562424
Alignment:
| Q |
71 |
actctatttacaacttgcataaattggaaatcttgaaactgaaacatttaccggatcttctttgtctaccagaacgtttgacttgcttaaaacatctcag |
170 |
Q |
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|||| ||||| | ||||| ||| |||||||||||||||||||||||||| | | |||| ||||||||| |||| |||||||||||| || ||||||| |
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| T |
30562243 |
actcaatttatagcttgcgtaatttggaaatcttgaaactgaaacatttttctaaacttcgttgtctaccggaacacttgacttgcttacaaaatctcag |
30562342 |
T |
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| Q |
171 |
acatcttatcattgaagattgtttttcattgtcttgtatgttcccttacattggaagattatcttccctaagaacagtaagt |
252 |
Q |
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| T |
30562343 |
acatcttgttattgaaaattgtgatgcattgtcccgtgtgttccctaacattggtaaattatcttccctaagaacattaagt |
30562424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 30475190 - 30475016
Alignment:
| Q |
84 |
cttgcataaattggaaatcttgaaactgaaacatttaccggatcttctttgtctaccagaacgtttgacttgcttaaaacatctcagacatcttatcatt |
183 |
Q |
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|||||| |||||||||||||||||| ||||| |||| | | || || ||||||| ||| |||||||| ||| | ||||||| |||||| ||||| |
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| T |
30475190 |
cttgcagaaattggaaatcttgaaattgaaatattttcgaaaactgacttttctaccaaaacacttgacttgtttacagaatctcaggcatcttgtcatt |
30475091 |
T |
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| Q |
184 |
gaagattgtttttcattgtcttgtatgttcccttacattggaagattatcttccctaagaacagtaagtgtatac |
258 |
Q |
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||||||||| ||||||||||||| |||| ||||| ||||||| ||| | || |||||||||| ||||||||||| |
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| T |
30475090 |
gaagattgtaattcattgtcttgtgtgtttccttatattggaaaattgtatttcctaagaacattaagtgtatac |
30475016 |
T |
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