View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18228_low_3 (Length: 831)
Name: NF18228_low_3
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18228_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 11 - 755
Target Start/End: Complemental strand, 33707370 - 33706632
Alignment:
| Q |
11 |
agcaaaggcactgaaactgatgaacataactctagtatgacagcaaatgtacatgtaatccgttgagttatctaaattgtccaaaaccgaggaagattaa |
110 |
Q |
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| T |
33707370 |
agcaaaggcactgaaactgatgaacataactctagtacgacagcaaatgtacatgtaatccgttgagttatctaaattgtccaaaatcgaggaagattaa |
33707271 |
T |
|
| Q |
111 |
gtgtatcacaatgatagatctattcatgtcttttagctcatgaatttacctatggttccataaaatatcatttatctccttttcatatgggttcacattg |
210 |
Q |
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| T |
33707270 |
gtgtatcacaatgatagatctattcatgtcttttagctcatgaatttatctatggttccataaaatatcatttatctccttttcatatgggttcacattg |
33707171 |
T |
|
| Q |
211 |
ggatgagagatgcatcaacggaacccagttctgccacggttgaggttagttatttctttgtgcagtatgaagccttacaaaatcacaatcattttatgca |
310 |
Q |
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| T |
33707170 |
ggatgagagatgcataaacggaacccagttctgccaaggttgaggttagttatttctttgtgcagtatgaagccttacaaaatcacaatcattttatgca |
33707071 |
T |
|
| Q |
311 |
tttatagggaaaattaaccatgatgttgtagacccactcaattttgtaagcaagttaactcaaatttgattcctgagtcctaattccatatgattctaag |
410 |
Q |
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| T |
33707070 |
tttataaggaaaattaaccatgatgttgtagacccactcaattttgtaagcaagttaactcaaatttgattcctgagtcctaattccatatgattctaag |
33706971 |
T |
|
| Q |
411 |
ttaatcggagagtttggcaaccatgaatgtctttatttcttccatcccatctcccttctagaaacctataacttcaacagtactcaatagtagcatactg |
510 |
Q |
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| T |
33706970 |
ttaatccgagagtttggcaaccatgaatgtctttatttcttccatcccatctcccttctagaaacctataacttcaacagtacttaatagtagcatactg |
33706871 |
T |
|
| Q |
511 |
aagactaaaggggaaattcaataaaactataaaatctgctccactctcttattgtgtataaaagcttattggcatagttgatacctgaaattatttgatc |
610 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
33706870 |
aagactaaagggtaaattcaataaaactataaaatctgctccactctcttattgtgtataaaaacttattggcatagttgatacctgaaattatctgatc |
33706771 |
T |
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| Q |
611 |
tgattccggctacttcaatgtgcagaataggtaggtcatgtcatttaactttctcagttcttgccattcaagacaaataaattaatgaactccaattcaa |
710 |
Q |
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| T |
33706770 |
tgattccggctacttcaatgtgcagaataggtaggtcatgtcatttaactttctcagttcttgccattcaag------aaagtaatgaactccaattcaa |
33706677 |
T |
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| Q |
711 |
aagaaattccatttctatattttaccagcatttaggaatatatat |
755 |
Q |
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| T |
33706676 |
aagaaattccatttctatattttaccagcatttaggaatatatat |
33706632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 816
Target Start/End: Original strand, 33371858 - 33371891
Alignment:
| Q |
783 |
ctgaccctctctgttgcacccccaagtaaaaact |
816 |
Q |
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| T |
33371858 |
ctgaccctctctattgcacccccaagtaaaaact |
33371891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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