View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18228_low_9 (Length: 534)

Name: NF18228_low_9
Description: NF18228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18228_low_9
NF18228_low_9
[»] chr5 (16 HSPs)
chr5 (6-522)||(3299690-3300214)
chr5 (6-522)||(3392583-3393107)
chr5 (6-308)||(1163333-1163638)
chr5 (32-213)||(1850127-1850293)
chr5 (32-308)||(40418478-40418758)
chr5 (340-459)||(1163164-1163288)
chr5 (1-83)||(39169016-39169101)
chr5 (304-394)||(1850346-1850444)
chr5 (168-308)||(38988036-38988180)
chr5 (6-308)||(39879989-39880297)
chr5 (451-500)||(39880491-39880540)
chr5 (306-387)||(39880327-39880405)
chr5 (306-387)||(40418782-40418860)
chr5 (6-308)||(39726593-39726906)
chr5 (6-95)||(38987874-38987963)
chr5 (334-387)||(38988229-38988282)
[»] chr4 (5 HSPs)
chr4 (164-308)||(44444395-44444543)
chr4 (168-263)||(25911951-25912046)
chr4 (452-493)||(25911657-25911698)
chr4 (1-88)||(25912122-25912209)
chr4 (351-387)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 6 - 522
Target Start/End: Original strand, 3299690 - 3300214
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  3299690 aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagag 3299789  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299790 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 3299889  T
Q  206 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttcta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299890 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttcta 3299989  T
Q  306 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299990 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgc 3300089  T
Q  406 ttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccatttactttcctgtcttccatgtgttgc 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  3300090 ttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgc 3300189  T
Q  498 actcaaacatggctagttttacttc 522  Q
    |||||||||||||||||||||||||    
T  3300190 actcaaacatggctagttttacttc 3300214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 6 - 522
Target Start/End: Original strand, 3392583 - 3393107
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  3392583 aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagag 3392682  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392683 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 3392782  T
Q  206 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttcta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392783 atccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttcta 3392882  T
Q  306 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392883 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgc 3392982  T
Q  406 ttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccatttactttcctgtcttccatgtgttgc 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  3392983 ttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgc 3393082  T
Q  498 actcaaacatggctagttttacttc 522  Q
    |||||||||||||||||||||||||    
T  3393083 actcaaacatggctagttttacttc 3393107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 1163638 - 1163333
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||  || | ||| ||||||||||||||  |||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||    
T  1163638 aatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagag 1163539  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 205  Q
    ||||||||||||||| |||| |||||||||||| || | ||  | ||| ||||||||||   |||||||||| |||||||||||||||||||||||||||    
T  1163538 caatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttatagacctttttttccattggaggatttgcttgatggatg 1163439  T
Q  206 at---ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagctttttt 302  Q
    ||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1163438 atgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgcttttcatttattagctttttt 1163339  T
Q  303 ctattt 308  Q
     |||||    
T  1163338 atattt 1163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 1850127 - 1850293
Alignment:
Q  32 taagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgc 131  Q
    ||||||||||||||| |||||||||||  |||||||| ||||||||||| |||||||||||||||||||||               ||| ||||||||||    
T  1850127 taagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa---------------atccaaccaactgc 1850211  T
Q  132 catccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccactt 213  Q
    ||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1850212 catccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctactt 1850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 32 - 308
Target Start/End: Original strand, 40418478 - 40418758
Alignment:
Q  32 taagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgc 131  Q
    ||||||||||||||| |||||||||||  | || |||||||||||||||||||||||||||||| ||  |||||||  ||||||| ||| ||||||  ||    
T  40418478 taagtgggaatctgattatcaactcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagc 40418577  T
Q  132 catccatttgacacaaccatca-aatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaaca 230  Q
     |  ||| |||     || ||  |||||||| | |  |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| |    
T  40418578 tacacatatgatgggcccttcgtaatcccccct-accagaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaa 40418676  T
Q  231 tcacttctattgatgttttgttacttccaataac--caaaa--caaggaagatgcttttcatttattagcttttttctattt 308  Q
    |||||| | || ||||||||||  ||||||||||  |||||  |||||||||||||||||||||||||| || |||||||||    
T  40418677 tcacttttgttaatgttttgtttgttccaataacaacaaaaatcaaggaagatgcttttcatttattaggttctttctattt 40418758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 340 - 459
Target Start/End: Complemental strand, 1163288 - 1163164
Alignment:
Q  340 acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||    ||    
T  1163288 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at 1163193  T
Q  431 tatattcggcatataaagtacatttcacc 459  Q
    ||||||||||||||||||| | |||||||    
T  1163192 tatattcggcatataaagttcctttcacc 1163164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39169016 - 39169101
Alignment:
Q  1 aagaaaatggtagaattgttgttggtg---agggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacact 83  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  39169016 aagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagacact 39169101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 304 - 394
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
Q  304 tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa 394  Q
    |||||||||||||||||||||||| ||        |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  1850346 tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa 1850444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 38988036 - 38988180
Alignment:
Q  168 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 266  Q
    ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | |||||||||||||  |||||||||| |     
T  38988036 agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaac 38988135  T
Q  267 ---aaacaaggaagatgcttttcatttattagcttttttctattt 308  Q
       || |||||||| |||| |||||||||||| || |||||||||    
T  38988136 aacaatcaaggaagctgctcttcatttattaggttctttctattt 38988180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 39879989 - 39880297
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| ||   ||| ||||||||||||||| |||||||||||  | || |||||||||||| ||||||||||| |||||  |  |||||    
T  39879989 aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaagag 39880088  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatca-aatccccctttagaagacctttttatccattggaggatttgcttgatggat 204  Q
    ||  ||||||| ||| ||||||  || |  ||| |||     || ||| |||||||| | |  |||||||||| |||||||||||| |||||||| ||||    
T  39880089 cagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcagaatcccccct-accagacctttttttccattggaggacttgcttgacggat 39880187  T
Q  205 gatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca-------aaacaaggaagatgcttttcatttattagct 297  Q
    |||| | |||| |||||||||||| ||||||| | |||||||||| ||  |||||||||  |       || |||||||||||||||||||||||||| |    
T  39880188 gatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgttccaataataacaacaacaatcaaggaagatgcttttcatttattaggt 39880286  T
Q  298 tttttctattt 308  Q
    | |||||||||    
T  39880287 tctttctattt 39880297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 500
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
Q  451 catttcacctcacccttccatttactttcctgtcttccatgtgttgcact 500  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39880491 catttcacctcaccctaccatttactttcctgtcttccatatgttgcact 39880540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
Q  306 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 387  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  39880327 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 39880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
Q  306 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 387  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  40418782 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 40418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 39726593 - 39726906
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttcgaccgaagag 105  Q
    ||||||||| |||||| ||   ||| ||||||||||||||| |||||||||||  | || ||||||||||||||| || |||| |||||| |   || ||    
T  39726593 aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacag 39726692  T
Q  106 caatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatg 205  Q
    ||  ||||||||||| || ||||  | |  ||| ||||    || ||  |  ||||  ||  ||||||||| ||||||||||||| |||||||| |||||    
T  39726693 caccctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctatcagaccttttgatccattggaggacttgcttgacggatg 39726792  T
Q  206 at----ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca-------aaacaaggaagatgcttttcatttatta 294  Q
    ||    | | |||| |||||||||||| ||||| | | |||||||||||||  |||||||||  |       || |||||||||||||||||||||||||    
T  39726793 atctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataataacaacaacaatcaaggaagatgcttttcatttatta 39726892  T
Q  295 gcttttttctattt 308  Q
    | || |||||||||    
T  39726893 ggttctttctattt 39726906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 38987874 - 38987963
Alignment:
Q  6 aatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaactcctcttc 95  Q
    ||||||||| |||||| ||   ||| ||||||||||||||| |||||||||||  | || ||||||||||||||| || |||| ||||||    
T  38987874 aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 38987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
Q  334 cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 387  Q
    |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  38988229 cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 38988282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 164 - 308
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
Q  164 tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 263  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa 44444444  T
Q  264 ccaaaa----caaggaagatgcttttcatttattagcttttttctattt 308  Q
    | ||||    ||||||| |||| ||||||||||||| || |||||||||    
T  44444443 cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt 44444395  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
Q  168 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 263  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912046 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
Q  452 atttcacctcacccttccatttactttcctgtcttccatgtg 493  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  25911698 atttcacctcaccctaccatttactttcctgtcttccatgtg 25911657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25912209 - 25912122
Alignment:
Q  1 aagaaaatggtagaattgttgttggtgagggtaagtgggaatctgagtatcaactctttgtaaaagatctacaacaagacactaaact 88  Q
    |||| ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||  ||||  ||||||| |||||| |||||||    
T  25912209 aagagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaattatctacagcaagaccctaaact 25912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
Q  351 tgcaatttgcaatttctgtttgatatttatgtttatt 387  Q
    |||| |||||||||||||||||||| |||||||||||    
T  25911821 tgcagtttgcaatttctgtttgatacttatgtttatt 25911785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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