View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18229_high_1 (Length: 955)
Name: NF18229_high_1
Description: NF18229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18229_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 854; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 18 - 944
Target Start/End: Complemental strand, 4488866 - 4487940
Alignment:
| Q |
18 |
caaagaagcttcaaaagttggactagtggataaagaatcggtttggatgatcccggagagcatagctaatttgctggactctgtcaataagtctgctata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4488866 |
caaagaagcttcaaaagttggactagtggataaagaatcggcttggatgatcccggagagcatagctaatttgctggactctgtcaataagtctgctata |
4488767 |
T |
|
| Q |
118 |
tcttatatggaaggtgctttaggaattaagacctactactcggaaagaagcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488766 |
tcttatatggaaggtgctttaggaattaagacctactactcggaaagaagcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaa |
4488667 |
T |
|
| Q |
218 |
agaatccagaggaagataaccgatacccaggattttatgctctacaagcatatgatagcattaacattgtaactcaagctttgaacagaatgaccagtag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4488666 |
agaatccagaggaagataaccgatacccaggattttatgctctacaagcatatgatagcattaacattgtaactcaagctttgaacagaatgaccagtag |
4488567 |
T |
|
| Q |
318 |
gaagaatagcagcccaaagactttactaagagaaatactttcttgcaatttcattggtttaagtggccatattcaacttgaatctggccaactcatgcag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4488566 |
gaagaatagcagcccaaagactttactaagagaaatactttcttgcaatttccttggtttaagtggccatattcaacttgaatctggccaactcatgcag |
4488467 |
T |
|
| Q |
418 |
aagaatcttgtcttaaggatagtaaatgtggctgggaagagttacaaggaattatgcttttggactcaacaacatggatttactacaatccaccatgcag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4488466 |
aagaatcttgtcttaaggatagtaaatgtggctgggaagagttacaaggaattatgcttttggactcaacaacatggatttactacaatccaccatgcag |
4488367 |
T |
|
| Q |
518 |
gacaaggtggaaataaggttgctggaaatacaaaatgtttcaggggtgtacggtggcctgggaattgggcccgtattccaaagggctggaatatgcccac |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4488366 |
gacaaggtggaaataaggttgctggaaatacaaaatgtttcaggggtgtacggtggcctgggaattgggcccgtattccaaagggctggaacatgcccac |
4488267 |
T |
|
| Q |
618 |
agnnnnnnntccattgagaattgcagtcagaagcagaacctcgttttccaggtttgtcaaggtagagtatggccagaatggagagcctgataaatatact |
717 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
4488266 |
agaaaaaaatccattgagaattgcagtcagaagcagaacctcgttttccaggtttgtcaaggttgtgtatggccagaatggagagcctgataaatatact |
4488167 |
T |
|
| Q |
718 |
ggattctgcattgaaatttttgagcatgtactgaaccatttggggtatgatctgccatataggtattatcccatcaatggaacctataatgatttggttc |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
4488166 |
ggattctgcattgaaatttttgagcatgtactgaaccatttggggtacgatctgccatatagttattatcccatcgatggaacctataatgatttggttc |
4488067 |
T |
|
| Q |
818 |
agcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaatgcttaattttggtttttatttgattatcatcctcctccctatcaac |
917 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4488066 |
agcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaatgcttaattttggtttctatttgattatcatcctcctccctatcaac |
4487967 |
T |
|
| Q |
918 |
tcaatactaggctattctgtcatgatg |
944 |
Q |
| |
|
|||||||||| | |||||| |||||| |
|
|
| T |
4487966 |
tcaatactagtcctttctgtgatgatg |
4487940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 916
Target Start/End: Complemental strand, 4483898 - 4483001
Alignment:
| Q |
18 |
caaagaagcttcaaaagttggactagtggataaagaatcggtttggatgatcccggagagcatagctaatttgctggactctgtcaataagtctgctata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483898 |
caaagaagcttcaaaagttggactagtggataaagaatcggtttggatgatcccggagagcatagctaatttgctggactctgtcaataagtctgctata |
4483799 |
T |
|
| Q |
118 |
tcttatatggaaggtgctttaggaattaagacctactactcggaaagaagcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
4483798 |
tcttatatggaaggtgctttaggaattaagacctactactcggaaagaagcagggagtataaagaatttaaggctcaattccagagaacgttttggtcaa |
4483699 |
T |
|
| Q |
218 |
agaatccagaggaagataaccgatacccaggattttatgctctacaagcatatgatagcattaacattgtaactcaagctttgaacagaatgaccagtag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4483698 |
agaatccagaggaagataaccgatacccaggattttatgctctacaagcatatgatagcattaacattgtaactcaagctttcaacagaatgaccagtag |
4483599 |
T |
|
| Q |
318 |
gaagaatagcagcccaaagactttactaagagaaatactttcttgcaatttcattggtttaagtggccatattcaacttgaatctggccaactcatgcag |
417 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
4483598 |
gaacaatagcagcccaaaatttttactaagcgaaatacagtctagcaatttcattggtttaagtggccatattcaacttgaagctggacaagtcatgcag |
4483499 |
T |
|
| Q |
418 |
aagaatcttgtcttaaggatagtaaatgtggctgggaagagttacaaggaattatgcttttggactcaacaacatggatttactacaatccaccatgcag |
517 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||| ||||| || ||||||||| ||||||||| |
|
|
| T |
4483498 |
aagaatcttgtcctaaggatagttaatgtggctgggaaaagttacaaggaattatgtttttggaccgaacagcatggcttcactacaatcaaccatgcag |
4483399 |
T |
|
| Q |
518 |
gacaaggtggaaataaggttgctggaaatacaaaatgtttcaggggtgtacggtggcctgggaattgggcccgtattccaaagggctggaatatgcccac |
617 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||||| | |||| ||||||||||| ||| ||||| || |
|
|
| T |
4483398 |
gacaaggtggaaataaggttactggaaaaacagaatgtttcaggggtgtccactggcctgggaatttagaccgtggtccaaagggct-gaacatgcctac |
4483300 |
T |
|
| Q |
618 |
ag--nnnnnnntccattgagaattgcagtcagaagcagaacctcgttttccaggtttgtcaaggtagagtatggccagaatggagagcctgataaatata |
715 |
Q |
| |
|
|| ||||||| ||||||||||| | || |||| ||||||| || ||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
4483299 |
agaaaaaaaaaaccattgaaaattgcagtcaaa---agtacctatttttccaagtatgtcaaggttgagtatggccagaatggaaagcctgataaatata |
4483203 |
T |
|
| Q |
716 |
ctggattctgcattgaaatttttgagcatgtactgaaccatttggggtatgatct------gccatataggtattatcccatcaatggaacctataatga |
809 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483202 |
gtggattctgcattgatatttttgagcatgtgctaaaccatttggggtacggtctgcctcggccatataggtattatcccatcaatggaacctataatga |
4483103 |
T |
|
| Q |
810 |
tttggttcagcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaatgcttaattttggtttttatttgattatcatcctcctcc |
909 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||| |||||||| ||| || |
|
|
| T |
4483102 |
tatggttcagcttgtctataacaaggtatcaaatctatcttt-----tctttgaaatgaaatgttttattttggtttctattttattatcattatccccc |
4483008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 34605271 - 34605528
Alignment:
| Q |
22 |
gaagcttcaaaagttggactagtggataaagaatcggtttggatgatcccggagagcatagctaatttgctggactctgtcaataagtctgctatatctt |
121 |
Q |
| |
|
||||||||| || | ||||||||||||| | | || | |||||| || | ||||||||| |||||||| |||| |||||||||||||| ||| |||| |
|
|
| T |
34605271 |
gaagcttcacaaatgggactagtggatagaaattcagcttggatagtctcagagagcataactaatttgttggattctgtcaataagtcgagtatttctt |
34605370 |
T |
|
| Q |
122 |
atatggaaggtgctttaggaattaagacctactactcggaaagaagcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaa |
221 |
Q |
| |
|
|||||||||| ||||||||||| || || |||||||| |||| |||| || |||||||| ||||||| ||| || ||| | | ||| | ||||| |
|
|
| T |
34605371 |
atatggaaggagctttaggaatcaaaacatactactcagaaaacagcaatgaatataaagattttgaggttcagtttaggaaagcttttcgagacaagaa |
34605470 |
T |
|
| Q |
222 |
tccagaggaagataaccgatacccaggattttatgctctacaagcatatgatagcatt |
279 |
Q |
| |
|
||| || ||||||||| | | || |||||||||||| | ||||||||||| |||||| |
|
|
| T |
34605471 |
tcctgacgaagataacagggatccgggattttatgctttgcaagcatatgacagcatt |
34605528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 709 - 837
Target Start/End: Original strand, 34605943 - 34606071
Alignment:
| Q |
709 |
aaatatactggattctgcattgaaatttttgagcatgtactgaaccatttgggg-tatgatctgccatataggtattatcccatcaatggaacctataat |
807 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| | || | ||| |||| ||| |||||||| |||||| |||||||||||||| | |||||||||| |
|
|
| T |
34605943 |
aaatatagtggattttgcattgaaatttttgagaaggtttt-aacaattttgggctatgatcttccatatgactattatcccatcaacgcaacctataat |
34606041 |
T |
|
| Q |
808 |
gatttggttcagcttgtctataacaaggta |
837 |
Q |
| |
|
||| ||||||| ||||| |||||||||||| |
|
|
| T |
34606042 |
gatctggttcaacttgtttataacaaggta |
34606071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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