View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18229_low_2 (Length: 566)
Name: NF18229_low_2
Description: NF18229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18229_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 40846807 - 40847271
Alignment:
| Q |
18 |
gaaaaggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846807 |
gaaaaggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaa |
40846906 |
T |
|
| Q |
118 |
acatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaa-gtttct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40846907 |
acatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaaagtttct |
40847006 |
T |
|
| Q |
217 |
caaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847007 |
caaacatgagacaattacttgataaaacgatggaaatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaaca |
40847106 |
T |
|
| Q |
317 |
ctcatctatgtggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccgattg |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40847107 |
ctcatctatttggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtatttctccgattg |
40847206 |
T |
|
| Q |
417 |
gaagaagactttcattataaataaccatttgacaacattcatgccttcctttaacaccaaccttt |
481 |
Q |
| |
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|
| T |
40847207 |
gaagaagactttcattataaataaccatttgacaacattcatgtctttctttaacaccaaccttt |
40847271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 116 - 524
Target Start/End: Original strand, 40842733 - 40843132
Alignment:
| Q |
116 |
aaacatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaagtttc |
215 |
Q |
| |
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|||||||||| | |||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
40842733 |
aaacatggtacgaagtatatgcttcgttttcaagaataaaatatatat-aattaagttcaagcagtgatttttcacttttataatcatcta--aagtttc |
40842829 |
T |
|
| Q |
216 |
tcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaac |
315 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40842830 |
tcaaacatgagacaattacttgataaa-cgatggacatttaacaaaatataacatgggaagtttacaatccatttattacaaaaataaataaatcataac |
40842928 |
T |
|
| Q |
316 |
actcatctat---gtggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccg |
412 |
Q |
| |
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|||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||| |||||||| |
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| T |
40842929 |
actcatctatttagtactagttcctaataaccataatcttcaacctcttggataaagctttaggcataggaaaacaattaac----catgcattcctcc- |
40843023 |
T |
|
| Q |
413 |
attggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaacaccaaccttttcaatcatatcggtactcaaattaaaccttt |
512 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
40843024 |
---ggaagaaggctctcattatagataaccatttgacaacattcatgtcttcctttaacaccaaccttctcaatcatgtcggtattcaaattaaaccttt |
40843120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 40847265 - 40847315
Alignment:
| Q |
506 |
aacctttccacttcttcgtctatatttaaataaaatatatccctatgcttc |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
40847265 |
aacctttccacttcttcgtctatatttaaataaaatatatccctattcttc |
40847315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 45401352 - 45401278
Alignment:
| Q |
33 |
aaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgta |
107 |
Q |
| |
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|||||||||| |||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |
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|
| T |
45401352 |
aaactatttatatgtttgacaacaataactaattcatatgaaacacacacagaaaagttaagcttaaaaaatgta |
45401278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 179 - 471
Target Start/End: Original strand, 4040870 - 4041145
Alignment:
| Q |
179 |
agtgatttttcacttttaaaatcatctataaagtttctcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtt |
278 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||| ||||||| | | ||| || || ||||||| ||||||||||||||||| | |||| |||| |
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| T |
4040870 |
agtgatttttcactcttaaaattatc--taaagtttctgaaacatgggctatttatttaat-aaacgatacacatttaacaaaatatgacatgggtagtt |
4040966 |
T |
|
| Q |
279 |
tacaatccatttattataaaaataaataaatcaaaacactcatctatgtggtagttcttaataaccataatcttcaacctcttagataaagctttacgca |
378 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| |||||||||||| ||| ||||| ||||| ||||||||||||||| ||||||| || || |
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| T |
4040967 |
tacaatccatttattat--atataaagaaatcataacactcatcta--------ttcctaatatccatactcttcaacctcttaggtaaagctatatgct |
4041056 |
T |
|
| Q |
379 |
tagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
471 |
Q |
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| |||| ||| ||| ||| |||||| | ||||||||||| |||||||||||||||||| | |||||||||| || |||||||||||| |
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| T |
4041057 |
aatgaaaataatcaac----catgcattccttcaattggaagaaggctttcattataaataaccgtctgacaacatttataccttcctttaac |
4041145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 404 - 471
Target Start/End: Complemental strand, 46503118 - 46503051
Alignment:
| Q |
404 |
attcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
471 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
46503118 |
attcctccaattggaagaagactttcattataaataaccatttgactacatctatgccttccattaac |
46503051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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