View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18229_low_3 (Length: 467)
Name: NF18229_low_3
Description: NF18229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18229_low_3 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 13715596 - 13716051
Alignment:
| Q |
1 |
acaccctcttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatgaaggcccgannnnnnnnnnnnnnnnatgtgggggg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
13715596 |
acaccctcttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatgaaggcccgagtgtgtgtgtgtgt--atgtgggggg |
13715693 |
T |
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| Q |
101 |
tggggacaaaggcatttcaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttggacaaatccccatccatagagt |
200 |
Q |
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| T |
13715694 |
tggggacaaaggcattccaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttagacaaatccccatccatagagt |
13715793 |
T |
|
| Q |
201 |
gaagccaatgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaat |
300 |
Q |
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| T |
13715794 |
gaagccaatgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaaagtaggatatttagggctaatgtatgagggaat |
13715893 |
T |
|
| Q |
301 |
ctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggc |
400 |
Q |
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| T |
13715894 |
ctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagacttcaccaatggctcaccgggc |
13715993 |
T |
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| Q |
401 |
cacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattat |
458 |
Q |
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| T |
13715994 |
cacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattat |
13716051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 238 - 457
Target Start/End: Original strand, 36099 - 36318
Alignment:
| Q |
238 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
337 |
Q |
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|||||| |||||||||||| | |||||||| |||||||||||| |||||||| | ||||||| ||||||| ||||||| |||||||| |||||||||| |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
338 |
atgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattcc |
437 |
Q |
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| T |
36199 |
atgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacccaaccacctgtccttccaaaagagaacattctccccattcc |
36298 |
T |
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| Q |
438 |
ctatgttccaattagaatta |
457 |
Q |
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| T |
36299 |
caatattccaagtagaatta |
36318 |
T |
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