View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18229_low_5 (Length: 320)

Name: NF18229_low_5
Description: NF18229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18229_low_5
NF18229_low_5
[»] chr6 (3 HSPs)
chr6 (1-303)||(32312712-32313014)
chr6 (47-198)||(5642567-5642717)
chr6 (50-122)||(6368742-6368814)
[»] chr3 (5 HSPs)
chr3 (50-217)||(48847594-48847762)
chr3 (44-199)||(621996-622151)
chr3 (117-209)||(16118491-16118583)
chr3 (55-217)||(45675677-45675838)
chr3 (108-181)||(19322388-19322461)
[»] scaffold0065 (1 HSPs)
scaffold0065 (45-214)||(49461-49630)
[»] chr7 (4 HSPs)
chr7 (43-219)||(10201339-10201516)
chr7 (45-168)||(27933478-27933601)
chr7 (50-196)||(3946914-3947067)
chr7 (140-217)||(36424246-36424320)
[»] chr1 (7 HSPs)
chr1 (51-217)||(43292713-43292879)
chr1 (44-209)||(9607556-9607722)
chr1 (53-183)||(35998117-35998247)
chr1 (51-122)||(16473494-16473565)
chr1 (50-175)||(47555688-47555815)
chr1 (96-209)||(5502785-5502898)
chr1 (50-183)||(31133533-31133666)
[»] chr8 (4 HSPs)
chr8 (53-198)||(41146144-41146289)
chr8 (49-199)||(11246940-11247090)
chr8 (107-200)||(39396858-39396951)
chr8 (48-142)||(29471756-29471850)
[»] chr4 (2 HSPs)
chr4 (53-200)||(41921946-41922093)
chr4 (116-198)||(47331584-47331666)
[»] scaffold0095 (1 HSPs)
scaffold0095 (107-200)||(37850-37943)
[»] chr5 (6 HSPs)
chr5 (52-217)||(15150774-15150939)
chr5 (70-209)||(12429731-12429871)
chr5 (50-205)||(37018811-37018960)
chr5 (51-200)||(37060269-37060418)
chr5 (45-198)||(38153333-38153486)
chr5 (143-218)||(15156589-15156664)
[»] chr2 (2 HSPs)
chr2 (108-165)||(6807123-6807180)
chr2 (143-216)||(36639087-36639160)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 32313014 - 32312712
Alignment:
Q  1 taaacagttacatatctggtaaagcagttataaattaaaacaattaagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32313014 taaacagttacatatctggtaaagcagttataaattaaaacaattaagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttc 32312915  T
Q  101 caatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgc 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32312914 caatgtgtttttgccgtgatttccaaaagctccagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtccgttttgcaaacgc 32312815  T
Q  201 cgtaccaaatagacactaactgtaatactattaggcaagtagatgtagcctgtaggaaagaatgacagaatctgttaggaacctttcttttggtacaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312814 cgtaccaaatagacactaactgtaatactattaggcaagtagatgtagcctgtaggaaagaatgacagaatctgttaggaacctttcttttggtacaaga 32312715  T
Q  301 aag 303  Q
    |||    
T  32312714 aag 32312712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 5642717 - 5642567
Alignment:
Q  47 agcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttc 146  Q
    |||||||||||| ||||||||| |||||| |||||| ||  |||||||| || ||||| | ||||| || ||||||||| ||| |||| |||||| ||||    
T  5642717 agcgtgtgtttgatttcccgtttgcaacacacaaaaccaaatttgcatgtttcccaatatatttttaccatgatttccagaagtttcaaatactaacttc 5642618  T
Q  147 tacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaac 198  Q
    ||||||| | | | |||||| |||||||| ||| ||| || ||||| |||||    
T  5642617 tacgctagcgt-gatttttgtcgtgattttcattaaactccgttttacaaac 5642567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 6368742 - 6368814
Alignment:
Q  50 gtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgattt 122  Q
    |||||||||||||| |||| |||||| | ||||||| ||||||| |||| || |||  |||||||||||||||    
T  6368742 gtgtgtttggtttcacgtttgcaacacagaaaagcacgtttgcacgcttcccgatgcatttttgccgtgattt 6368814  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 48847594 - 48847762
Alignment:
Q  50 gtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctac 149  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | ||||| |||  ||||||||||||||| || |||||||| |||||| ||||  |    
T  48847594 gtgtgtttggttttccgtttgcaacatacaaaagcatgtttgcacgttttccgatgcatttttgccgtgattttcacaagcttcaaatactaacttcctc 48847693  T
Q  150 gctaacatggttttttgccgtgatttcca-tcaaagtctgttttgcaaacgccgtaccaaatagacact 217  Q
    |||||| |||||||||||||||||||||| ||||| |||||||| ||||||| |||||||| |||||||    
T  48847694 gctaacgtggttttttgccgtgatttccattcaaactctgtttttcaaacgctgtaccaaacagacact 48847762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 622151 - 621996
Alignment:
Q  44 ttaagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagc 143  Q
    ||||| ||| ||||||||||| ||| ||||||||||||||||  |||||||| | | | ||| ||||||||||||||||  ||||||| || ||||||||    
T  622151 ttaagtgtgggtttggtttcctgtttgcaacatacaaaagcacatttgcatgttattcgatgcgtttttgccgtgatttttaaaagctccaaatactagc 622052  T
Q  144 ttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacg 199  Q
    ||||||| |||| ||||||||||| ||||||| ||||||| ||| |||||||||||    
T  622051 ttctacgttaacgtggttttttgctgtgattttcatcaaactctattttgcaaacg 621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 16118583 - 16118491
Alignment:
Q  117 tgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaa 209  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||  |||||||    
T  16118583 tgatttccaaaagctccaaatactagcttctacgctaacgtggttttttgtcgtgatttccatcaaattctattttgcaaacgctataccaaa 16118491  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 45675677 - 45675838
Alignment:
Q  55 tttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgctaa 154  Q
    |||||||||||||| |||||| |||| | || ||||| |  |||| | || || ||||| |||||||  || || ||||| |||||| ||||||||||||    
T  45675677 tttggtttcccgtttgcaacacacaataacacgtttgtacacttttcgatttg-ttttgtcgtgattctcagaaacttcaaatactaacttctacgctaa 45675775  T
Q  155 catggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagacact 217  Q
    | ||||||||| |||||||||| |||||| || ||||| |||| ||  ||||||| |||||||    
T  45675776 cgtggttttttaccgtgatttctatcaaactccgtttttcaaaagcaataccaaacagacact 45675838  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 19322388 - 19322461
Alignment:
Q  108 tttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatca 181  Q
    |||||||| ||||||||| || || || |||||| ||||| ||||||| |||||||||||| ||||||||||||    
T  19322388 tttttgccatgatttccataaactccaaatactaacttcttcgctaacgtggttttttgccatgatttccatca 19322461  T

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Target: scaffold0065 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 49461 - 49630
Alignment:
Q  45 taagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagct 144  Q
    |||| ||||||||||||||||||| |||| | ||||||||| ||||||| ||||| ||||| ||| ||||| |||| || | |||||  | |||||| ||    
T  49461 taagtgtgtgtttggtttcccgtttgcaataaacaaaagcacgtttgcacgcttttcaatgcgttgttgccatgatctctagaagctctaaatactaact 49560  T
Q  145 tctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagac 214  Q
    |||||||| ||||||||||||| |||||||| ||| ||| || ||||||||||||| |||| ||||||||    
T  49561 tctacgcttacatggttttttgtcgtgattttcattaaactccgttttgcaaacgctgtactaaatagac 49630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 10201516 - 10201339
Alignment:
Q  43 attaagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactag 142  Q
    ||||| |||||||||||||| ||||| |||||| |||||| || ||||||| ||||||  |||| ||||||| |||||||||||||||| || |||||||    
T  10201516 attaatcgtgtgtttggttttccgtttgcaacacacaaaatcacgtttgcacgctttctgatgtatttttgctgtgatttccaaaagctccaaatactag 10201417  T
Q  143 cttctacgctaacatggttttttgccgtgatttccatc-aaagtctgttttgcaaacgccgtaccaaatagacactaa 219  Q
    ||||||||||||| || |||||||  |||||||||| | ||||||  ||||||||| ||  ||||||| | |||||||    
T  10201416 cttctacgctaacgtgattttttgttgtgatttccaccaaaagtccattttgcaaatgcaataccaaacaaacactaa 10201339  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 27933478 - 27933601
Alignment:
Q  45 taagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagct 144  Q
    ||||||| ||| || ||||||||| |||||| ||||||||| |||| || | ||||| || | ||||| ||||||||| || |||||  | |||||||||    
T  27933478 taagcgtatgtgtgatttcccgtttgcaacacacaaaagcacgtttacacgttttccgatatatttttaccgtgattttcagaagctctaaatactagct 27933577  T
Q  145 tctacgctaacatggttttttgcc 168  Q
    ||||||||||  || |||||||||    
T  27933578 tctacgctaatgtgattttttgcc 27933601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 3947067 - 3946914
Alignment:
Q  50 gtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatt-------tccaaaagcttcagatactag 142  Q
    ||||||||||||||  ||| |||||| |||||||||| |||||| | || |  ||||||||||| ||||| |       | || ||||| || |||| ||    
T  3947067 gtgtgtttggtttcgtgtttgcaacaaacaaaagcatatttgcacgtttcctgatgtgtttttgtcgtgaatcgtgatctacagaagctccaaataccag 3946968  T
Q  143 cttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaa 196  Q
    ||||||| || |||| |||||||||||||||||| |||||| |  |||||||||    
T  3946967 cttctaccctgacatagttttttgccgtgatttctatcaaacttcgttttgcaa 3946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 36424246 - 36424320
Alignment:
Q  140 tagcttctacgctaacatggttttttgcc-gtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagacact 217  Q
    ||||||||||||||||    |||||| || ||||||| ||||||| ||||||||||||| || |||||||| |||||||    
T  36424246 tagcttctacgctaac----ttttttccctgtgattttcatcaaactctgttttgcaaatgcagtaccaaacagacact 36424320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 43292879 - 43292713
Alignment:
Q  51 tgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacg 150  Q
    |||||||||||||| ||| ||| || ||||||||| ||||||||| ||||   | ||||||| ||||||||| || ||||| || |||||| ||| ||||    
T  43292879 tgtgtttggtttcctgtttgcaccacacaaaagcacgtttgcatgttttcgggtatgtttttaccgtgattttcagaagctccaaatactaacttttacg 43292780  T
Q  151 ctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagacact 217  Q
     |||||||||||||| ||||||||||||||||| |||||||  |||||||||  | |||||||||||    
T  43292779 ttaacatggttttttaccgtgatttccatcaaactctgtttgacaaacgccgagctaaatagacact 43292713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 9607556 - 9607722
Alignment:
Q  44 ttaagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagc 143  Q
    ||||| ||||||||||||||||||| || ||| ||||||||| ||||||||| ||  ||| ||||||||||||| ||||  | |||||  | |||||| |    
T  9607556 ttaagtgtgtgtttggtttcccgtttgcgacacacaaaagcacgtttgcatgtttctcaacgtgtttttgccgtaatttttagaagctctaaatactaac 9607655  T
Q  144 ttctacgctaacatgg-ttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaa 209  Q
    ||||  |||||| ||| |||||||||||||||| |||||||  | ||||||||||||| ||||||||    
T  9607656 ttctttgctaacgtggtttttttgccgtgattttcatcaaacaccgttttgcaaacgctgtaccaaa 9607722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 35998247 - 35998117
Alignment:
Q  53 tgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgct 152  Q
    |||||| ||||||||| |||| | ||||||||| |||||||||||| |  ||| ||||||| ||||||||  | ||||| || |||||| ||||| ||||    
T  35998247 tgtttgatttcccgtttgcaatacacaaaagcacgtttgcatgcttcctgatgcgtttttgtcgtgatttttagaagctccaaatactaacttcttcgct 35998148  T
Q  153 aacatggttttttgccgtgatttccatcaaa 183  Q
    ||| |  ||||||| ||||||||||||||||    
T  35998147 aacgtaattttttgtcgtgatttccatcaaa 35998117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 16473565 - 16473494
Alignment:
Q  51 tgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgattt 122  Q
    ||||||||||||||| |  |||||||||||||||| ||||||| ||||  |||||||||||| |||||||||    
T  16473565 tgtgtttggtttcccatctgcaacatacaaaagcacgtttgcacgcttctcaatgtgttttttccgtgattt 16473494  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 47555815 - 47555688
Alignment:
Q  50 gtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttg--ccgtgatttccaaaagcttcagatactagcttct 147  Q
    |||||||||||||||| || ||||||  ||||| ||  ||| || | ||| ||||||||||||   ||||||||| |||||| |||| ||| ||||||||    
T  47555815 gtgtgtttggtttcccatttgcaacaatcaaaatcacatttacacgtttttcaatgtgttttttttccgtgattttcaaaagtttcaaatattagcttct 47555716  T
Q  148 acgctaacatggttttttgccgtgattt 175  Q
    |  ||||||||||||||||  |||||||    
T  47555715 atactaacatggttttttgttgtgattt 47555688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 5502785 - 5502898
Alignment:
Q  96 ctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgca 195  Q
    ||||||||||| |||||| |||||||| ||||| ||  | |||||| |||||||  ||||||||| ||||  ||| ||||| |||||| ||| |||| ||    
T  5502785 ctttccaatgtatttttgtcgtgattttcaaaaactctaaatactaacttctacattaacatggtattttatcgtaatttctatcaaactctattttaca 5502884  T
Q  196 aacgccgtaccaaa 209  Q
    ||| | ||||||||    
T  5502885 aacacagtaccaaa 5502898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 31133666 - 31133533
Alignment:
Q  50 gtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctac 149  Q
    ||||||||| ||||| ||| |||| ||| |||| |||||||| ||  ||| | || | |||||||||| ||||  | ||| ||||  |||||  ||||||    
T  31133666 gtgtgtttgatttcctgtttgcaatataaaaaaacatgtttgtatatttttcgatttatttttgccgttatttttagaagtttcaagtactaatttctac 31133567  T
Q  150 gctaacatggttttttgccgtgatttccatcaaa 183  Q
    |||||| || |||||| ||||||||| |||||||    
T  31133566 gctaacgtgtttttttaccgtgattttcatcaaa 31133533  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 41146289 - 41146144
Alignment:
Q  53 tgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgct 152  Q
    |||||||||||||||| |||||| ||||||||||  ||||| ||||||| ||   ||||||||||||||  || ||||| || ||||||| ||||||| |    
T  41146289 tgtttggtttcccgtttgcaacacacaaaagcatacttgcacgctttccgatacatttttgccgtgattctcataagctccaaatactagtttctacgtt 41146190  T
Q  153 aacatggttttttgccgtgatttccatcaaagtctgttttgcaaac 198  Q
    ||| |||||||||||||||||||| |||||| || |||||||||||    
T  41146189 aacgtggttttttgccgtgatttctatcaaactccgttttgcaaac 41146144  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 11246940 - 11247090
Alignment:
Q  49 cgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttcta 148  Q
    |||||||||||||| | ||| |||||| |||||| ||  |||||| | || |||||||||||||  |||||||| || |||||||| ||| ||||||||     
T  11246940 cgtgtgtttggttttctgtttgcaacacacaaaaacacttttgcacgattcccaatgtgtttttatcgtgattttcagaagcttcaaatattagcttctg 11247039  T
Q  149 cgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacg 199  Q
    ||||||  | ||||||||||||||| ||||||||| |  ||||||||||||    
T  11247040 cgctaaagtagttttttgccgtgatctccatcaaacttcgttttgcaaacg 11247090  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 39396858 - 39396951
Alignment:
Q  107 gtttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgc 200  Q
    |||||||||||||||| || ||||| || ||||||||||||  |||||| |||||||||||||||||||||||| ||  |||||||||||||||    
T  39396858 gtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgcaaacgc 39396951  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 29471850 - 29471756
Alignment:
Q  48 gcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactag 142  Q
    ||||||||||||||| ||||| |||||||| |||||||  ||||||||||| || |||  ||||||  |||||||||| |||||||| |||||||    
T  29471850 gcgtgtgtttggttttccgtttgcaacatataaaagcacatttgcatgcttcccgatgcatttttgttgtgatttccagaagcttcaaatactag 29471756  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 41921946 - 41922093
Alignment:
Q  53 tgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgct 152  Q
    |||||| |||||  || |||||| |||||| || |||||||  ||||||||||  ||||||||||||||  || ||||| || ||||||||||||| | |    
T  41921946 tgtttgatttcctctttgcaacacacaaaaacacgtttgcacactttccaatgcatttttgccgtgattctcataagctccaaatactagcttctaggtt 41922045  T
Q  153 aacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgc 200  Q
    ||| |||||||||||||||||||| |||||| || ||||| |||||||    
T  41922046 aacgtggttttttgccgtgatttctatcaaactccgtttttcaaacgc 41922093  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 47331584 - 47331666
Alignment:
Q  116 gtgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaac 198  Q
    |||||||| |||||||||| ||||||||||||| | |||  || |||||||||||||||| ||||||| | |||||| |||||    
T  47331584 gtgatttctaaaagcttcaaatactagcttctatgataatgtgattttttgccgtgattttcatcaaattgtgttttacaaac 47331666  T

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Target: scaffold0095 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 37943 - 37850
Alignment:
Q  107 gtttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgc 200  Q
    |||||||||||||||| || ||||| || ||||||||||||  |||||| |||||||||||||||||||||||| ||  |||||||||||||||    
T  37943 gtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgcaaacgc 37850  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 15150939 - 15150774
Alignment:
Q  52 gtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgc 151  Q
    |||||||||||||  || |||||| | |||| || |||| || ||||| |||||  |||||||||| ||||| ||||| |||| |||||| |||||| ||    
T  15150939 gtgtttggtttcctctttgcaacaaataaaaacaagtttacacgcttttcaatgcatttttgccgtaatttctaaaagtttcaaatactaacttctatgc 15150840  T
Q  152 taacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagacact 217  Q
    |||| ||||| |||| |||||||| |||||||  || |||| |||||||  |||||||||||||||    
T  15150839 taacgtggttgtttgtcgtgattttcatcaaaccctatttttcaaacgctctaccaaatagacact 15150774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 12429871 - 12429731
Alignment:
Q  70 gcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatg-gttttttgcc 168  Q
    |||||| | ||||||| ||||||| |||||||||||  |||||||||||||||  | |||||  | || ||||||| | ||||||| || ||||||||||    
T  12429871 gcaacacataaaagcacgtttgcacgctttccaatgcatttttgccgtgattttgataagctctaaattctagcttattcgctaacgtgagttttttgcc 12429772  T
Q  169 gtgatttccatcaaagtctgttttgcaaacgccgtaccaaa 209  Q
    |||||||||||||||  ||||||||||||| | ||||||||    
T  12429771 gtgatttccatcaaacactgttttgcaaacactgtaccaaa 12429731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 37018960 - 37018811
Alignment:
Q  50 gtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctac 149  Q
    |||||||||||||| |||| |||||| | ||||| ||||||| | ||||||  ||||| ||||||||||||||||| | ||| |  |||||     ||||    
T  37018960 gtgtgtttggtttcgcgtttgcaacacataaaagtatgtttgtacgctttctgatgtgattttgccgtgatttccaga-gctcctaatact-----ctac 37018867  T
Q  150 gctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtac 205  Q
    |||||| |||||||||||||| |||||||||||| |||| ||||||||||| ||||    
T  37018866 gctaacgtggttttttgccgtaatttccatcaaactctgctttgcaaacgcggtac 37018811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 37060269 - 37060418
Alignment:
Q  51 tgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagcttctacg 150  Q
    |||||||||||| | ||| |||||| |||||| |  ||||||||| |||| |||| ||| ||| | ||| ||  | ||||| || |||||| |||||||     
T  37060269 tgtgtttggttttctgtttgcaacacacaaaaacgcgtttgcatgttttcgaatgcgttattgtcatgaattttagaagctccaaatactaacttctaca 37060368  T
Q  151 ctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgc 200  Q
     ||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  37060369 ttaacatgattttttgccgtgatttccatccaactctgttttgcaaacgc 37060418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 38153486 - 38153333
Alignment:
Q  45 taagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagcttcagatactagct 144  Q
    ||||| ||||||||||||||||||  ||||| |||||| || ||||  | || |  | || | ||||||| ||||||| || |||||||| |||||||||    
T  38153486 taagcatgtgtttggtttcccgtttccaacacacaaaatcacgtttatacgcctctcgatatctttttgctgtgatttgcagaagcttcaaatactagct 38153387  T
Q  145 tctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaac 198  Q
    || ||| |||  || ||||||||||||| || ||||||| || || ||||||||    
T  38153386 tccacgttaaactgattttttgccgtgactttcatcaaattccgtcttgcaaac 38153333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 15156589 - 15156664
Alignment:
Q  143 cttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagacacta 218  Q
    |||||||| ||||||| |||||||| || |||||||||||| || ||||||||||||| ||| |||  ||||||||    
T  15156589 cttctacgttaacatgattttttgctgtaatttccatcaaactcggttttgcaaacgcagtatcaatcagacacta 15156664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 6807123 - 6807180
Alignment:
Q  108 tttttgccgtgatttccaaaagcttcagatactagcttctacgctaacatggtttttt 165  Q
    ||||||| |||||||||| |||||  | |||||||||||||||  |||||||||||||    
T  6807123 tttttgctgtgatttccagaagctctaaatactagcttctacgtcaacatggtttttt 6807180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 36639087 - 36639160
Alignment:
Q  143 cttctacgctaacatggttttttgccgtgatttccatcaaagtctgttttgcaaacgccgtaccaaatagacac 216  Q
    |||||||| ||||||  |||||||  ||||||| ||||||| || ||||||||||||  ||| |||||||||||    
T  36639087 cttctacgataacataattttttgttgtgattttcatcaaactccgttttgcaaacgttgtatcaaatagacac 36639160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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