View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18229_low_7 (Length: 265)

Name: NF18229_low_7
Description: NF18229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18229_low_7
NF18229_low_7
[»] chr6 (4 HSPs)
chr6 (16-190)||(24167136-24167310)
chr6 (39-187)||(29795021-29795169)
chr6 (46-187)||(28482614-28482754)
chr6 (134-187)||(34516338-34516391)
[»] chr1 (9 HSPs)
chr1 (16-187)||(14591965-14592136)
chr1 (41-187)||(35950036-35950180)
chr1 (60-187)||(911228-911355)
chr1 (93-187)||(1047887-1047981)
chr1 (137-181)||(46599097-46599141)
chr1 (138-184)||(1049004-1049050)
chr1 (103-185)||(34079921-34080003)
chr1 (157-190)||(9239473-9239506)
chr1 (134-190)||(25018202-25018258)
[»] chr7 (6 HSPs)
chr7 (42-187)||(22491638-22491783)
chr7 (39-187)||(29272788-29272940)
chr7 (83-190)||(41085024-41085131)
chr7 (57-187)||(3765635-3765765)
chr7 (103-187)||(39878651-39878735)
chr7 (134-187)||(41816285-41816338)
[»] chr5 (4 HSPs)
chr5 (58-187)||(19555151-19555280)
chr5 (113-187)||(43229220-43229294)
chr5 (134-187)||(39144473-39144526)
chr5 (137-187)||(20654713-20654763)
[»] chr4 (12 HSPs)
chr4 (39-182)||(46307362-46307501)
chr4 (83-187)||(48706925-48707029)
chr4 (72-187)||(4729288-4729403)
chr4 (103-187)||(23544140-23544224)
chr4 (107-187)||(36119521-36119601)
chr4 (134-187)||(10310408-10310461)
chr4 (134-190)||(48035447-48035503)
chr4 (103-184)||(53849368-53849449)
chr4 (103-187)||(54681851-54681935)
chr4 (101-187)||(29696408-29696494)
chr4 (134-187)||(55961266-55961319)
chr4 (103-187)||(7138791-7138875)
[»] chr8 (9 HSPs)
chr8 (72-187)||(39565996-39566111)
chr8 (89-190)||(36265828-36265929)
chr8 (103-184)||(30203230-30203311)
chr8 (105-184)||(3460779-3460858)
chr8 (134-187)||(16220765-16220818)
chr8 (103-184)||(26724676-26724757)
chr8 (103-187)||(37810182-37810266)
chr8 (149-186)||(8051584-8051621)
chr8 (134-187)||(40917894-40917947)
[»] scaffold0294 (1 HSPs)
scaffold0294 (72-187)||(2151-2266)
[»] chr2 (6 HSPs)
chr2 (72-187)||(13481471-13481586)
chr2 (92-187)||(3601821-3601916)
chr2 (89-187)||(13039560-13039658)
chr2 (134-187)||(29078419-29078472)
chr2 (90-187)||(31642467-31642564)
chr2 (103-187)||(6191839-6191923)
[»] chr3 (7 HSPs)
chr3 (72-187)||(30675679-30675794)
chr3 (103-190)||(10723669-10723756)
chr3 (134-187)||(9020638-9020691)
chr3 (137-187)||(28850054-28850104)
chr3 (137-187)||(29077386-29077435)
chr3 (113-186)||(7269574-7269647)
chr3 (90-186)||(45774598-45774694)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 24167136 - 24167310
Alignment:
Q  16 gttagcacattgtttttatccaaattttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24167136 gttagcacattgtttttatccaaattttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatg 24167235  T
Q  116 tcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaataa 190  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24167236 tcaattactaaatttatgtctttctttcctccaactttctattccagtttctcttgtaccaaacaaccaaaataa 24167310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 29795021 - 29795169
Alignment:
Q  39 attttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtcttt 138  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||  |||||    
T  29795021 attttatttttccacaaaaactataaacaattagtttatatatactaacatattatttttgtttaagggtattaatgtcaattattaaatttagatcttt 29795120  T
Q  139 ctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  29795121 ctttcctccatctttctatttcactttctcttgtaccaaataaccaaaa 29795169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 28482614 - 28482754
Alignment:
Q  46 ttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcct 145  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||  ||||||||||||    
T  28482614 ttttccacaaaaactataaacaattagtttatatatactaacatattatttt-gtttaagggtattaatgtcaattattaaatttagatctttctttcct 28482712  T
Q  146 ccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||| ||||||||| ||||||||||||||||||| ||||||||    
T  28482713 ccatctttctatttcactttctcttgtaccaaataaccaaaa 28482754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 34516338 - 34516391
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||||||  ||||||| |||||||||||| || ||||||||||||||||    
T  34516338 tctttctttcctttaactttccattccactttcttttataccaaacaaccaaaa 34516391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 14591965 - 14592136
Alignment:
Q  16 gttagcacattgtttttatccaaattttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatg 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||     
T  14591965 gttagcacattgtttttattcaaattttatttttccactaaaactatagacaattagtttatatatacggacatattatttttgtttaagggtattaata 14592064  T
Q  116 tcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14592065 tcaattactaaatttaggtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 14592136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 35950180 - 35950036
Alignment:
Q  41 tttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttct 140  Q
    ||||||||||||| ||||||||| |||||||||||||| || |||||||  ||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  35950180 tttatttttccacaaaaactataaacaattagtttataaatactaacat--tatttttgtttaaaggtattaatgtcaattactaaattttggtctttct 35950083  T
Q  141 ttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||    
T  35950082 tttctccaactttctattccacattctcttgtaccaaacaaccaaaa 35950036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 911355 - 911228
Alignment:
Q  60 tatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattc 159  Q
    |||||| |||| |||||||||| |||||||||||||||||||||||||| || || |||||| ||||||||| ||||| |||| |||||||||| ||||     
T  911355 tatagataatttgtttatatatactaacatattatttttgtttaagggtttttatatcaattactaaatttaggtcttccttttctccaactttttattt 911256  T
Q  160 cactttctcttgtaccaaacaaccaaaa 187  Q
    || ||||| || || |||||||||||||    
T  911255 cattttcttttatatcaaacaaccaaaa 911228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 1047981 - 1047887
Alignment:
Q  93 atttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||||||||| ||| |||| |||| |||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  1047981 atttttgtttaagggcatttatgttaattactaactttaactctttctttcttccaactttctattccactttctcttgtaccaaacaactaaaa 1047887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 46599141 - 46599097
Alignment:
Q  137 ttctttcctccaactttctattccactttctcttgtaccaaacaa 181  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||    
T  46599141 ttctttcctcttactttctattctactttctcttgtaccaaacaa 46599097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 1049004 - 1049050
Alignment:
Q  138 tctttcctccaactttctattccactttctcttgtaccaaacaacca 184  Q
    |||||||||  ||||||||||| |||||||||| |||||||||||||    
T  1049004 tctttcctcttactttctattctactttctcttctaccaaacaacca 1049050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 34080003 - 34079921
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaa 185  Q
    ||||||||| |||||||||  ||||| |   | |||||||||| |||||| |||||||| ||||| || ||||||||||||||    
T  34080003 aagggtatttatgtcaattaataaatatggatatttctttccttcaacttcctattccattttcttttataccaaacaaccaa 34079921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 9239473 - 9239506
Alignment:
Q  157 ttccactttctcttgtaccaaacaaccaaaataa 190  Q
    |||||||||||||| |||||||||||||||||||    
T  9239473 ttccactttctcttataccaaacaaccaaaataa 9239506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 25018202 - 25018258
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaataa 190  Q
    |||||||||| | ||||| || | || |||||||||| |||||||||||||||||||    
T  25018202 tctttctttctttcaactatccactctactttctcttataccaaacaaccaaaataa 25018258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 22491638 - 22491783
Alignment:
Q  42 ttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctt 141  Q
    |||||||||||||| |||  ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||| |||||  ||||||||    
T  22491638 ttatttttccactataaccgtagacaattagtttatatatattaacatattatttttatttaagggtattaatgtcaattactacatttagatctttctt 22491737  T
Q  142 tcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||  ||||||||| ||||||||||||||||||||||||||||||    
T  22491738 tccttaaactttctactccactttctcttgtaccaaacaaccaaaa 22491783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 29272940 - 29272788
Alignment:
Q  39 attttatttttccactaaaactatagacaattagtttatatatc----ctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgt 134  Q
    ||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||| |||||||||||||| |||||||||  |    
T  29272940 attttatttttccactaaaactataaacaattagtttatatatatatactaacatattatttttgtttaaggatattaatgtcaattactaaatttagat 29272841  T
Q  135 ctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||| |  ||||||| ||||| |||||||||||||||||||||||||||    
T  29272840 ctttcttttcatcaactttttattctactttctcttgtaccaaacaaccaaaa 29272788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 41085131 - 41085024
Alignment:
Q  83 ctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaac 182  Q
    |||||||||||||||||||||||||| || ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41085131 ctaacatattatttttgtttaagggtttttatgtcgattactaaatttaagtctttctttcctccaactttctattccactttctcttataccaaacaac 41085032  T
Q  183 caaaataa 190  Q
    ||||||||    
T  41085031 caaaataa 41085024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 3765635 - 3765765
Alignment:
Q  57 aactatagacaattagtttatatatcctaa-catattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttct 155  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||| |||| ||||||| |  ||||| || ||||||||||||| |||||||||    
T  3765635 aactatagacaat-agtttatatatgctaaacatattatttttgtttaaggttatttatgtcaactattaaatgtaggtctttctttccttcaactttct 3765733  T
Q  156 attccactttctcttgtaccaaacaaccaaaa 187  Q
    ||  || |||||||| ||| ||||||||||||    
T  3765734 atctcattttctcttatactaaacaaccaaaa 3765765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 39878735 - 39878651
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||| |||||||||  ||||| ||| |||||||||||| ||||||||||||||| ||||| || ||||||||||||||||    
T  39878735 aagggtatttatgtcaattaataaatatatatctttctttccttcaactttctattccattttcttttataccaaacaaccaaaa 39878651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 41816285 - 41816338
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||||||| |||| | |||||||||| ||  |||||||||||||||    
T  41816285 tctttctttcctccaattttccaatccactttctattaaaccaaacaaccaaaa 41816338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 19555151 - 19555280
Alignment:
Q  58 actatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctat 157  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||| |||||||||||    
T  19555151 actatagacaatttgtttatatatactaacatattatttttgtttaaggatttttatgtcaattactaaatttatgtctttctttccttcaactttctat 19555250  T
Q  158 tccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||| || ||||||||||||||||    
T  19555251 tccactttcttttataccaaacaaccaaaa 19555280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 43229294 - 43229220
Alignment:
Q  113 atgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||| ||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  43229294 atgtcaattactaaatttaggtctttgtttccttcaactttctattccactttctcttataccaaacaactaaaa 43229220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 39144526 - 39144473
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||||||  || ||||||||||||||||| |||||||||||||||||||    
T  39144526 tctttctttcctttaattttctattccactttcttttgtaccaaacaaccaaaa 39144473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 20654763 - 20654713
Alignment:
Q  137 ttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||||||||||| |||| ||||||||  |||||||||||||||    
T  20654763 ttctttcctccaactttctaatccattttctcttaaaccaaacaaccaaaa 20654713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 46307501 - 46307362
Alignment:
Q  39 attttatttttccactaaaactatagacaattagtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtcttt 138  Q
    |||||||||||||||||||    |||||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||| ||||||||| ||||||    
T  46307501 attttatttttccactaaa----tagacaattagtttatatatactaacatattatttttatttaaggatattaatatcaattactaaatttaggtcttt 46307406  T
Q  139 ctttcctccaactttctattccactttctcttgtaccaaacaac 182  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||    
T  46307405 ctttccttcaactttctattcaactttctcttataccaaacaac 46307362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 48707029 - 48706925
Alignment:
Q  83 ctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaac 182  Q
    ||||||||||||||||||||||||||| | ||||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  48707029 ctaacatattatttttgtttaagggtacttatgtcaattactacatttaggcatttctttcctccaactttctattccactttctcttgtaccaaacaac 48706930  T
Q  183 caaaa 187  Q
    |||||    
T  48706929 caaaa 48706925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 4729288 - 4729403
Alignment:
Q  72 gtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttg 171  Q
    |||||||||| |||||||||||| ||| |||||||||||| ||||||| | | |||| || |||||||||| ||||||||||||||| || |||||||||    
T  4729288 gtttatatatactaacatattatatttatttaagggtatttatgtcaactaccaaatgtaagtctttcttttctccaactttctatttcaatttctcttg 4729387  T
Q  172 taccaaacaaccaaaa 187  Q
    ||||||||||||||||    
T  4729388 taccaaacaaccaaaa 4729403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 23544224 - 23544140
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||| |||| ||||  ||||| ||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  23544224 aagggtatttatgttaattaataaatatatatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaa 23544140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 36119521 - 36119601
Alignment:
Q  107 gtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||| |||||||||  ||||| ||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  36119521 gtatttatgtcaattaataaatatatatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaa 36119601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 10310408 - 10310461
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  10310408 tctttctttccttcaactttctattccactttcttttataccaaacaaccaaaa 10310461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 48035503 - 48035447
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaataa 190  Q
    ||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||||    
T  48035503 tctttctttcctccaactttccaatccactttctcttatacgaaacaaccaaaataa 48035447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 53849368 - 53849449
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaacca 184  Q
    ||||||||| |||||||||  |||||  || ||||||||| |||  ||||| ||||| |||||||||| |||||||||||||    
T  53849368 aagggtatttatgtcaattaataaatacatatctttcttttctcttactttttattctactttctcttttaccaaacaacca 53849449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 54681935 - 54681851
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||| ||||||||| ||| || ||  | |||| ||||| ||| ||||||||||||||||| || ||||||||||| ||||    
T  54681935 aagggtatttatgtcaattactatatatagatttttccttccttcaattttctattccactttctattataccaaacaactaaaa 54681851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 29696408 - 29696494
Alignment:
Q  101 ttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||  ||||||||  ||||| ||  ||||||||||||  | ||||||||| |||||||| |  ||||||||||||||||    
T  29696408 ttaagggtatttttgtcaattattaaatatagatctttctttccttaacctttctatttcactttctttcataccaaacaaccaaaa 29696494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 55961266 - 55961319
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||||||| |||||| |||||||||| ||  |||||| ||||||||    
T  55961266 tctttctttcctccaattttctaatccactttctattaaaccaaataaccaaaa 55961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 7138875 - 7138791
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||| || ||||||||| |||||  ||| || || ||||||| |||| |||| |||||||||||||  ||||||||| |||||    
T  7138875 aagggtgtttatgtcaattactaaaaatatatcattttttcctcaaactgtctaatccactttctcttaaaccaaacaatcaaaa 7138791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 39565996 - 39566111
Alignment:
Q  72 gtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttg 171  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||| | |||| |   ||||||||||||||||||||||||||||||||||| ||    
T  39565996 gtttatatatactaacatattatttttgtttaagggtaattatgtcaattacaaaatgttgatctttctttcctccaactttctattccactttctcgtg 39566095  T
Q  172 taccaaacaaccaaaa 187  Q
    ||||||||||||||||    
T  39566096 taccaaacaaccaaaa 39566111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 36265828 - 36265929
Alignment:
Q  89 tattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaat 188  Q
    |||||| |||||||||||||||| || ||||||  ||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  36265828 tattatatttgtttaagggtatttatatcaattattaaatgtaggtctttctttcctccaactttctatcccactttctcttgtatcaaacaacccaaat 36265927  T
Q  189 aa 190  Q
    ||    
T  36265928 aa 36265929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 30203230 - 30203311
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaacca 184  Q
    ||||||||| |||||||||  ||||  ||| |||||||||||||  ||||||||||| |||||||||| |||||||||||||    
T  30203230 aagggtatttatgtcaattaataaagatatatctttctttcctcttactttctattctactttctcttttaccaaacaacca 30203311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 3460858 - 3460779
Alignment:
Q  105 gggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaacca 184  Q
    ||||||| |||||| |||| |||| ||  |||||||||||||  |||||||| ||||||||||||| |||||||||||||    
T  3460858 gggtatttatgtcagttgcaaaatataaatctttctttcctctcactttctaatccactttctcttataccaaacaacca 3460779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 16220765 - 16220818
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||    
T  16220765 tctttctttcctttaactttctattccactttctcttataccaaacatccaaaa 16220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 26724676 - 26724757
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaacca 184  Q
    ||||||||| |||||||||  ||||  ||| ||||||||||||   ||||||||||| |||||||||| |||||||||||||    
T  26724676 aagggtatttatgtcaattaataaagatatatctttctttccttttactttctattctactttctcttttaccaaacaacca 26724757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 37810266 - 37810182
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||| || ||||||||| |||||  ||  || |||||||||| ||||||||| || ||||||||||  |||||||||||||||    
T  37810266 aagggtgtttatgtcaattactaaaaataaatcattctttcctcaaactttctaatcgactttctcttaaaccaaacaaccaaaa 37810182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 8051584 - 8051621
Alignment:
Q  149 actttctattccactttctcttgtaccaaacaaccaaa 186  Q
    |||||||  |||||||||||||||||||||||||||||    
T  8051584 actttcttctccactttctcttgtaccaaacaaccaaa 8051621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 40917947 - 40917894
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||||||| |||| | |||||||||| ||  |||||||||||||||    
T  40917947 tctttctttcctccaattttccaatccactttctattaaaccaaacaaccaaaa 40917894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 2266 - 2151
Alignment:
Q  72 gtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttg 171  Q
    |||||||||| ||||||| || |||||||||||||||| | ||||||||| | |||| ||  ||||||||||||||||||||||||||||||||| ||||    
T  2266 gtttatatatactaacattttttttttgtttaagggtaattatgtcaattacaaaatgtagatctttctttcctccaactttctattccactttcccttg 2167  T
Q  172 taccaaacaaccaaaa 187  Q
    ||||||||||||||||    
T  2166 taccaaacaaccaaaa 2151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 13481586 - 13481471
Alignment:
Q  72 gtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttg 171  Q
    |||||||||| ||||||||||||||||||||||||| | | |||||||||   |||| ||  ||||||||||||||||||||||||||||||||| ||||    
T  13481586 gtttatatatactaacatattatttttgtttaagggcaattatgtcaattagaaaatatagatctttctttcctccaactttctattccactttcccttg 13481487  T
Q  172 taccaaacaaccaaaa 187  Q
    ||||||||||||||||    
T  13481486 taccaaacaaccaaaa 13481471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 3601916 - 3601821
Alignment:
Q  92 tatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||||||||||| ||||||||| | |||| ||||| |||||||||| ||| |||||| |||||||||| ||||| |||||||||||||    
T  3601916 tatttttgtttaagggtatttatgtcaattaccaaatgtatgtttttctttccttcaattttctactccactttcttttgtatcaaacaaccaaaa 3601821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 13039658 - 13039560
Alignment:
Q  89 tattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||||||||||||||| | |||||||||  || ||||| |  |||||||| ||||||||| ||||||| ||| ||||||||||||||| |||||    
T  13039658 tattatttttgtttaagggtacttatgtcaattattacatttaggattttctttcttccaactttttattccattttttcttgtaccaaacaaacaaaa 13039560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 29078472 - 29078419
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  29078472 tctttctttccttcaactttctattccactttcttttataccaaacaaccaaaa 29078419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 31642467 - 31642564
Alignment:
Q  90 attatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||| || ||||||||| ||||||||   ||||| ||  |||||||||||| |||||||||| |  ||||||| || ||||||||||||||||    
T  31642467 attatttttattcaagggtatttatgtcaatcaataaatatagatctttctttccttcaactttctactttactttcttttataccaaacaaccaaaa 31642564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 6191923 - 6191839
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||| || ||||||||| |||||  ||  || |||||||||| |||||| || |||||||||||||  |||||||||||||||    
T  6191923 aagggtgtttatgtcaattactaaaaatagatcattctttcctcaaactttttaatccactttctcttaaaccaaacaaccaaaa 6191839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 30675794 - 30675679
Alignment:
Q  72 gtttatatatcctaacatattatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttg 171  Q
    |||||||||| |||| |||||||||||||||||||||| | ||| ||||| | |||| ||  ||||||||||||||||||||| ||||||||||| ||||    
T  30675794 gtttatatatactaatatattatttttgtttaagggtaattatgccaattacaaaatgtagatctttctttcctccaactttccattccactttcccttg 30675695  T
Q  172 taccaaacaaccaaaa 187  Q
    ||||||||||||||||    
T  30675694 taccaaacaaccaaaa 30675679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 10723669 - 10723756
Alignment:
Q  103 aagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaataa 190  Q
    ||||||||| ||||||||| ||| || ||  |||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||    
T  10723669 aagggtatttatgtcaattactatatatagatctttctttccttcaactttctattccactttctattataccaaacaactaaaataa 10723756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 9020638 - 9020691
Alignment:
Q  134 tctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||||||||| |||||| |||||||||| ||  |||||||||||||||    
T  9020638 tctttctttcctccaattttctaatccactttctattaaaccaaacaaccaaaa 9020691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 28850054 - 28850104
Alignment:
Q  137 ttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    |||||||||| ||||||| | |||||||||||||  |||||||||||||||    
T  28850054 ttctttcctcaaactttcgaatccactttctcttaaaccaaacaaccaaaa 28850104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 29077435 - 29077386
Alignment:
Q  137 ttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaa 187  Q
    ||||||||| | ||||||||||| |||||||||| ||||||||||||||||    
T  29077435 ttctttccttccactttctattc-actttctcttataccaaacaaccaaaa 29077386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 7269574 - 7269647
Alignment:
Q  113 atgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaa 186  Q
    ||||||||| |||||  ||| | ||||||||||   |||||||   ||||||||||||||||||||||||||||    
T  7269574 atgtcaattactaaaaatatatgtttctttcctttcactttcttccccactttctcttgtaccaaacaaccaaa 7269647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 45774694 - 45774598
Alignment:
Q  90 attatttttgtttaagggtattaatgtcaattgctaaatttatgtctttctttcctccaactttctattccactttctcttgtaccaaacaaccaaa 186  Q
    ||||||||| |||| || |||  ||||||||| |||||  ||| | ||||||||||   |||||||  || |||||||||| |||||||||||||||    
T  45774694 attatttttatttagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttctcttataccaaacaaccaaa 45774598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University