View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18229_low_8 (Length: 238)
Name: NF18229_low_8
Description: NF18229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18229_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38883883 - 38884110
Alignment:
| Q |
1 |
tttacagatgcctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38883883 |
tttacagatgcctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgc |
38883982 |
T |
|
| Q |
101 |
ctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38883983 |
ctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaa |
38884082 |
T |
|
| Q |
201 |
agtctatggtatgaccctcatgatgatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38884083 |
agtctatggtatgaccctcatgatgatg |
38884110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38893075 - 38893298
Alignment:
| Q |
1 |
tttacagatgcctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
38893075 |
tttactgatgcctatgatctgttctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatggtgccgggaagcccggtacattgc |
38893174 |
T |
|
| Q |
101 |
ctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaa |
200 |
Q |
| |
|
| ||||||||||||||||| || ||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||| ||||| || |
|
|
| T |
38893175 |
cacccaatgtatcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtaggaagaa |
38893274 |
T |
|
| Q |
201 |
agtctatggtatgaccctcatgat |
224 |
Q |
| |
|
||| ||||||||||| || ||||| |
|
|
| T |
38893275 |
agtgtatggtatgacactgatgat |
38893298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 37316106 - 37315993
Alignment:
| Q |
97 |
ttgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcagga |
196 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||| ||| ||||||| || || |||| |||||||||||||| |||||||| || || ||||| || | |
|
|
| T |
37316106 |
ttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaa |
37316007 |
T |
|
| Q |
197 |
aaaaagtctatggt |
210 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
37316006 |
aaaaagtttatggt |
37315993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 33115133 - 33115227
Alignment:
| Q |
124 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccct |
218 |
Q |
| |
|
|||||||| |||||| ||||| |||| |||| |||||||||||||| ||||||||||| || ||||| || ||| ||| ||||| |||||||| |
|
|
| T |
33115133 |
aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgaccct |
33115227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University