View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18230_low_2 (Length: 435)
Name: NF18230_low_2
Description: NF18230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18230_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 44579106 - 44579515
Alignment:
| Q |
13 |
cagatcaaactaataaacccatcatacaaaaaatcctatttaacaaaaccccaattacnnnnnnncacctaatctataagcaaaactagccaccaatcga |
112 |
Q |
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| T |
44579106 |
cagatcaaactaataaacccatcatacaaaaaatcctatttaacaaaaccccaattactttttttcacctaatctataagcaaaactagccaccaatcga |
44579205 |
T |
|
| Q |
113 |
accagaacaaaaaatcatgatttcaaacagaccaatatgatacctctaattcaataatggaaaaagataca-ggaacaaactttcgcatgacaagagagg |
211 |
Q |
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| T |
44579206 |
accagaacaaaaaatcatcatttcaaacagaccaatatgatacctctaattcaataatggaaaaagataaaaggaacaaactttcgcatgacaagagagg |
44579305 |
T |
|
| Q |
212 |
gataaagttcaaaaata----cccagaagcataacaaaaggaaaatgttcaaagggtcgttagaaaactgaaaataaaaaccttcttcaatggaagataa |
307 |
Q |
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| T |
44579306 |
gataaagttcaaaaataataccccagaagcataacaaaaggaaaatgttcaaagggtcgttagaaaactgaaaataaaaaccttcttcaatggaagataa |
44579405 |
T |
|
| Q |
308 |
agctacttatctggtggaaaagttccaagaattggtggctgagaagccggaaaaaaggagctttttgggaagaaaacctggaaggaatccagaggtgaga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44579406 |
agctacttatctggtggaaaagttccaagaattggtggctgagaagccggaaaaaaggagctttttgggaagaaaacctggaaggaatccagaggtgaga |
44579505 |
T |
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| Q |
408 |
atcacgacat |
417 |
Q |
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| T |
44579506 |
atcacgacat |
44579515 |
T |
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