View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18230_low_3 (Length: 267)

Name: NF18230_low_3
Description: NF18230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18230_low_3
NF18230_low_3
[»] chr4 (2 HSPs)
chr4 (1-176)||(167051-167225)
chr4 (180-249)||(2306757-2306827)
[»] chr8 (1 HSPs)
chr8 (177-249)||(21538084-21538157)
[»] chr1 (2 HSPs)
chr1 (175-231)||(35840678-35840734)
chr1 (175-249)||(41570406-41570481)
[»] chr7 (1 HSPs)
chr7 (186-249)||(13332658-13332722)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 167051 - 167225
Alignment:
Q  1 cactgtgactaccctttaaagaatcaggcaaataaaaccaatcaagttgataagttaatttttcttatgctggatgtgttcttgcacgttttcatttcca 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167051 cactgtgactacactttaaa-aatcaggcaaataaaaccaatcaagttgataagttaatttttcttatgctggatgtgttcttgcacgttttcatttcca 167149  T
Q  101 aaaggaatgagttcaaataaccggaagnnnnnnnnnngaaataagttggccaattttggcgttgggatatatacat 176  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  167150 aaaggaatgagttcaaataaccggaagaaaaaagaaagaaataagttggccaattttggcgttgggatatatacat 167225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 2306827 - 2306757
Alignment:
Q  180 caatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacatta 249  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||| ||||||| ||||||||||||||||||    
T  2306827 caatgctattatccacgaatgaaagtaaacgaaaatcacgaattctactaaagtgattttcacaaacatta 2306757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 21538084 - 21538157
Alignment:
Q  177 cagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacatta 249  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  21538084 cagcaatgctattaaccacgaatgaaaataaacgaaaaccacgaattgtactaaagtgattttcacaaatatta 21538157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 35840678 - 35840734
Alignment:
Q  175 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa 231  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  35840678 atcagcaatgctattaaccacgaatgaaaataaacgaaaaccatgaattgtactaaa 35840734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 41570406 - 41570481
Alignment:
Q  175 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacatta 249  Q
    ||||||||||||||| |||||||||  ||| |||| ||||| || || ||| ||||| ||||||||||||||||||    
T  41570406 atcagcaatgctattcaccacgaatagaaacaaacgaaaacgacaaactgtgctaaagtgattttcacaaacatta 41570481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 13332658 - 13332722
Alignment:
Q  186 tattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacatta 249  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||    
T  13332658 tattaaccacgaattaaaataaacgaaaaccacaaattgtactaaagtgattttcacaaacatta 13332722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University