View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18231_low_10 (Length: 297)
Name: NF18231_low_10
Description: NF18231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18231_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 36189724 - 36189935
Alignment:
| Q |
23 |
tagataaacaaaagtcgatgtatgtcatttaaattttaaacgagatgcaagaacttttgttgactcatatgtatcttataaatatgataaaataaagtaa |
122 |
Q |
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| T |
36189724 |
tagataaacaaaagtcgatgtatgtcatttaaattttaaacgagatgcatgaacttttattgactcaaatgtatcttataaatatgacaaaataaagcaa |
36189823 |
T |
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| Q |
123 |
cataaatatagaatgatttctaactaacggtttggtttacctactttgaatttttaatttaaaaatgcttttgtttctgtcaatataatttattaacaat |
222 |
Q |
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| T |
36189824 |
cataaatatagaatgatttcccactaacggtttggtttacctactttgaatttt---tttaaaaatgcttttgtttctgtcaatataatttattaacaat |
36189920 |
T |
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| Q |
223 |
attgacttatggttt |
237 |
Q |
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| T |
36189921 |
attgacttatggttt |
36189935 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 33128287 - 33128327
Alignment:
| Q |
74 |
aacttttgttgactcatatgtatcttataaatatgataaaa |
114 |
Q |
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| T |
33128287 |
aacttttgttgacttaaatgtctcttataaatatgataaaa |
33128327 |
T |
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