View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18231_low_11 (Length: 245)

Name: NF18231_low_11
Description: NF18231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18231_low_11
NF18231_low_11
[»] chr2 (5 HSPs)
chr2 (19-239)||(37896697-37896917)
chr2 (19-239)||(37958273-37958493)
chr2 (25-239)||(37952535-37952749)
chr2 (25-226)||(28166431-28166631)
chr2 (25-226)||(44905276-44905476)
[»] chr3 (2 HSPs)
chr3 (35-226)||(11528125-11528316)
chr3 (25-119)||(39712621-39712715)
[»] chr1 (2 HSPs)
chr1 (35-226)||(13228366-13228556)
chr1 (25-119)||(40768488-40768582)
[»] chr4 (2 HSPs)
chr4 (25-226)||(11149101-11149301)
chr4 (25-226)||(34538894-34539094)
[»] chr7 (1 HSPs)
chr7 (25-225)||(38757413-38757612)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 37896917 - 37896697
Alignment:
Q  19 gcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtctttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37896917 gcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtctttta 37896818  T
Q  119 tgcatagaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37896817 tgcatagaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaatttttagggacccaaaagggcttgaaaatgttttcttaagaga 37896718  T
Q  219 ctattttgaagaaagaaaaac 239  Q
     ||||||||||||||||||||    
T  37896717 ttattttgaagaaagaaaaac 37896697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 37958273 - 37958493
Alignment:
Q  19 gcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtctttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37958273 gcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaagtcttggtctttta 37958372  T
Q  119 tgcatagaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagaga 218  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||    
T  37958373 tacatagaaattgtgaagtagttgacttgaagtcaactccttgttttgatagaaattttttgagggacccaaaagggcttgaaaatgttttcttaagaga 37958472  T
Q  219 ctattttgaagaaagaaaaac 239  Q
    |||||||||||||||||||||    
T  37958473 ctattttgaagaaagaaaaac 37958493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 37952535 - 37952749
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcata 124  Q
    |||||||| |||||||||||||||||||| |||| |||||| ||||| ||||||||||  ||||| | |||||| |||||||||||||||||||| |||     
T  37952535 gttttccccaaccatggtctttgcattgccatcaaatattgccatgtgatggatgataactgttgcaatcatttaatgaaatcttggtcttttatccatc 37952634  T
Q  125 gaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattt 224  Q
    | ||  |||| ||||||||||| |||||   |||||||||||| ||| ||  |||  | |||||| |||| |||||| || | ||||||| || |||||     
T  37952635 gtaaaggtgatgtagttgacttcaagtcgcaaccttgttttgacagacaagttttgcgagacccagaaggacttgaagatttattcttaaaaggctatta 37952734  T
Q  225 tgaagaaagaaaaac 239  Q
    |||| ||||||||||    
T  37952735 tgaaaaaagaaaaac 37952749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 28166631 - 28166431
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcata 124  Q
    ||||| ||| |||||||| |||||||||  ||||||||||| || || |||||||||| | |||| | ||||||||||||||||||||||||||| |||     
T  28166631 gtttttcctgaccatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatc 28166532  T
Q  125 gaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattt 224  Q
     |    |  | |||||||| |||||||||  |||||||||||| ||| ||  ||| ||||| |||||||| ||||| ||||||||||| || ||||||||    
T  28166531 aaggaggaaatgtagttgaattgaagtcattaccttgttttgacagagaagttttgaggga-ccaaaaggacttgagaatgttttcttcagtgactattt 28166433  T
Q  225 tg 226  Q
    ||    
T  28166432 tg 28166431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 44905476 - 44905276
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcata 124  Q
    ||||| ||| |||||||| |||||||||  ||||||||||| || || |||||||||| | |||| | ||||||||||||||||||||||||||| |||     
T  44905476 gtttttcctgaccatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatc 44905377  T
Q  125 gaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattt 224  Q
     |    |  | |||||||| |||||||||  | |||||||||| ||| ||  ||| ||||| |||||||| ||||||||||||||||| |  ||||||||    
T  44905376 aaggaggaaatgtagttgaattgaagtcactatcttgttttgacagagaagttttgaggga-ccaaaaggacttgaaaatgttttcttcaatgactattt 44905278  T
Q  225 tg 226  Q
    ||    
T  44905277 tg 44905276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 11528316 - 11528125
Alignment:
Q  35 accatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcatagaaattgtga 134  Q
    ||||||||||||||||||  |||||||||||||| || |||||||||||  ||||   ||||||||||||||||||||||||||| |||  ||   ||||    
T  11528316 accatggtctttgcattggcatcacatattgtcacgtgatggatgatagaagttgcgatcatttcatgaaatcttggtcttttatccatcaaagaggtga 11528217  T
Q  135 agtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattttg 226  Q
     |||||||| ||||| |||  |||||||||||| ||| ||  ||| |||||||||| ||| |||||  ||||||||||||| ||||||||||    
T  11528216 tgtagttgaattgaaatcactaccttgttttgacagagaagttttgagggacccaagaggacttgaggatgttttcttaagggactattttg 11528125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 39712715 - 39712621
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttat 119  Q
    ||||| || ||||||||| |||||||||  || |||||||| || || ||||||| ||   |||| | |||||||||||||||||||||||||||    
T  39712715 gtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttat 39712621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 13228366 - 13228556
Alignment:
Q  35 accatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcatagaaattgtga 134  Q
    |||||||| |||||||||  ||||||||||| || || |||||||||| | |||| | ||||||||||||||||||||||||||| |||| |    |  |    
T  13228366 accatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccataaaggaggaaa 13228465  T
Q  135 agtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattttg 226  Q
     |||||||| |||||||||  |||||||||||| ||| ||  ||| ||||| |||||||  ||||| ||||||||||| || ||||||||||    
T  13228466 tgtagttgaattgaagtcactaccttgttttgacagagaagttttgaggga-ccaaaagaacttgagaatgttttcttcagtgactattttg 13228556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 40768582 - 40768488
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttat 119  Q
    ||||| |||||||||||| |||||||||  ||||||||||| || || |||||||||| | |||| | |||||| ||||||||||||||||||||    
T  40768582 gtttttcctaaccatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcattttatgaaatcttggtcttttat 40768488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 11149101 - 11149301
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcata 124  Q
    ||||| ||| |||||||| |||||||||  ||||||||||| ||  | |||||||||| | |||| | ||||||||||||||||||||||||||| |||     
T  11149101 gtttttcctgaccatggtatttgcattggcatcacatattgccacatgatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatc 11149200  T
Q  125 gaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattt 224  Q
     |    |  | |||||||| |||||| ||  |||||||||||||||| ||  ||| ||||| |||||||| ||||| ||| ||||||| || ||||||||    
T  11149201 aaggaggaaatgtagttgaattgaagacactaccttgttttgatagagaagttttgaggga-ccaaaaggacttgagaatattttcttcagtgactattt 11149299  T
Q  225 tg 226  Q
    ||    
T  11149300 tg 11149301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 34539094 - 34538894
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcata 124  Q
    ||||| ||| |||||||| |||||||||  |||||||||||||  || |||||||||| | |||| | |||||||||||||| ||| |||||||| |||     
T  34539094 gtttttcctgaccatggtatttgcattggcatcacatattgtcccgtgatggatgataatagttgcaatcatttcatgaaatattgatcttttatccatc 34538995  T
Q  125 gaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattt 224  Q
     |    |  | |||||||| |||||||||  |||||||||||| | | ||  ||| ||||| |||||||| ||||| |||||||||||  | ||||||||    
T  34538994 aaggaggaaatgtagttgaattgaagtcactaccttgttttgacaaagaagttttgaggga-ccaaaaggacttgagaatgttttcttcggtgactattt 34538896  T
Q  225 tg 226  Q
    ||    
T  34538895 tg 34538894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 38757612 - 38757413
Alignment:
Q  25 gttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcata 124  Q
    ||||| ||| |||||||| |||||||||  ||||||||||| ||  | |||||||||| | |||| | ||||||||||||||||||||||||||| |||     
T  38757612 gtttttcctgaccatggtatttgcattggcatcacatattgacacatgatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatc 38757513  T
Q  125 gaaattgtgaagtagttgacttgaagtcaacaccttgttttgatagaaaaaattttagggacccaaaagggcttgaaaatgttttcttaagagactattt 224  Q
     |    |  | |||||||| |||||||||  |||||||||||| ||| ||  ||| ||||| |||||||| ||||| ||||||||||| || ||| ||||    
T  38757512 aaggaggaaatgtagttgaattgaagtcactaccttgttttgacagagaagttttgaggga-ccaaaaggacttgagaatgttttcttcagtgaccattt 38757414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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