View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18231_low_2 (Length: 707)
Name: NF18231_low_2
Description: NF18231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18231_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 2801842 - 2801448
Alignment:
| Q |
1 |
ttgagattattgatatttgataatatgtagaggcaatctgcacgcataaaaatgaataagttgtaaacaatacaaactactactacctattgaatgtcaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2801842 |
ttgagattattgatatttgataatatgtag--gcaatctgcacgcataaaaatgaataagttgtaaacaatacaaactactactacccattgaatgtcaa |
2801745 |
T |
|
| Q |
101 |
ccagagtggaaatttgaagccaagggtaaatgtatctcatttagtggaacataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801744 |
ccagagtggaaatttgaagccaagggtaaatgtatctcatttagtggaacataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcct |
2801645 |
T |
|
| Q |
201 |
aattctgcagtaacagcagctgattagcgacatggaaagcaaacgaaatacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801644 |
aattctgcagtaacagcagctgattagcgacatggaaagcaaacgaaatacgggtagaacaagaaaatcctctagagggattgagacttaactttctgtt |
2801545 |
T |
|
| Q |
301 |
tggtccattccatcacaagtcgagcttcatcatggttaatttcacgatcactaacaagttcaacttccataatcattccatttcttctcacattagc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801544 |
tggtccattccatcacaagtcgagcttcatcatggttaatttagcgatcactaacaagttcaacttccataatcattccatttcttctcacattagc |
2801448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 112 - 397
Target Start/End: Original strand, 1678995 - 1679280
Alignment:
| Q |
112 |
atttgaagccaagggtaaatgtatctcatttagtggaacataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgcagt |
211 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1678995 |
atttgaagccaagggtaaatgcatctcatttagtggaacataggaaatgtttaatctgaagacaattcttcagttgcacctgcactcctaattctgcagt |
1679094 |
T |
|
| Q |
212 |
aacagcagctgattagcgacatggaaagcaaacgaaatacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattcc |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679095 |
aacagcagctgattagcgacatggaaagcagacgaaatacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattcc |
1679194 |
T |
|
| Q |
312 |
atcacaagtcgagcttcatcatggttaatttcacgatcactaacaagttcaacttccataatcattccatttcttctcacattagc |
397 |
Q |
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| T |
1679195 |
atcacaagtcgagcttcatcatggttaattttgcgatcactaacaagttcaacttccataatcattccatttcttctcacattagc |
1679280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 486 - 694
Target Start/End: Complemental strand, 2801359 - 2801151
Alignment:
| Q |
486 |
taggaagcatataatgaatcatatacagtaaaagagagaaatctataaacaatgggaacaacaaaacttaagttcttaggcatcaagtcagcaatttaat |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2801359 |
taggaagcatataatgaatcatatacagtaaaaaagagaaatctataaacaatgggaacaacaaaaattaagttcttaggcatcaagtcagcaatttaat |
2801260 |
T |
|
| Q |
586 |
actatctataaaagagcttatttacaacagtgtttcaacacaaaagatctgtcttaagtctatgtgtcgtttttaaaagcacttctacttagaaagcatt |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801259 |
actatctataaaagagcttatttacaacagtgtttcaacacaaaagatctgtcttaagtctatgtgtcgtttttaaaagcacttctacttagaaagcatt |
2801160 |
T |
|
| Q |
686 |
gttaaagtt |
694 |
Q |
| |
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||||||||| |
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|
| T |
2801159 |
gttaaagtt |
2801151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 486 - 694
Target Start/End: Original strand, 1679369 - 1679577
Alignment:
| Q |
486 |
taggaagcatataatgaatcatatacagtaaaagagagaaatctataaacaatgggaacaacaaaacttaagttcttaggcatcaagtcagcaatttaat |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1679369 |
taggaagcatataatgaatcatatacagtaaaaaagagaaatctataaacaatgggaacaacaaaatttaagttcttaggcatcaagtcagcaatttaat |
1679468 |
T |
|
| Q |
586 |
actatctataaaagagcttatttacaacagtgtttcaacacaaaagatctgtcttaagtctatgtgtcgtttttaaaagcacttctacttagaaagcatt |
685 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1679469 |
actatctataaaagagcttatttacaacagtgtttcaacacaaaagatctgtcttaagtctatgtgtcgtttttaaaagcacttctacttagaaagcgtt |
1679568 |
T |
|
| Q |
686 |
gttaaagtt |
694 |
Q |
| |
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||||||||| |
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|
| T |
1679569 |
gttaaagtt |
1679577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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