View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18231_low_4 (Length: 569)

Name: NF18231_low_4
Description: NF18231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18231_low_4
NF18231_low_4
[»] scaffold0009 (2 HSPs)
scaffold0009 (257-551)||(23867-24161)
scaffold0009 (19-47)||(24151-24179)
[»] chr1 (8 HSPs)
chr1 (48-258)||(46336302-46336512)
chr1 (49-261)||(32495721-32495933)
chr1 (54-255)||(19595971-19596172)
chr1 (54-259)||(43997150-43997355)
chr1 (54-223)||(43632844-43633013)
chr1 (133-257)||(11692536-11692661)
chr1 (210-258)||(19887028-19887076)
chr1 (54-95)||(38953659-38953699)
[»] chr6 (3 HSPs)
chr6 (49-258)||(23594519-23594728)
chr6 (54-258)||(26377806-26378010)
chr6 (54-259)||(14277210-14277414)
[»] chr4 (5 HSPs)
chr4 (49-258)||(12240558-12240767)
chr4 (51-258)||(49620577-49620784)
chr4 (54-252)||(23666591-23666789)
chr4 (154-252)||(24851012-24851110)
chr4 (121-240)||(47895535-47895655)
[»] chr3 (2 HSPs)
chr3 (54-259)||(45903313-45903518)
chr3 (54-97)||(41570066-41570109)
[»] chr2 (3 HSPs)
chr2 (54-258)||(38992705-38992909)
chr2 (200-252)||(26692003-26692055)
chr2 (173-258)||(26691907-26691990)
[»] chr5 (8 HSPs)
chr5 (48-258)||(39305458-39305668)
chr5 (48-241)||(9625448-9625641)
chr5 (46-234)||(17539962-17540140)
chr5 (389-551)||(22927880-22928042)
chr5 (390-518)||(23022902-23023030)
chr5 (422-519)||(21263149-21263246)
chr5 (419-522)||(21249013-21249116)
chr5 (449-519)||(21350409-21350479)
[»] chr7 (7 HSPs)
chr7 (46-234)||(14792361-14792549)
chr7 (48-258)||(4926101-4926311)
chr7 (47-258)||(19680929-19681140)
chr7 (91-258)||(41985279-41985446)
chr7 (108-252)||(7260258-7260402)
chr7 (157-258)||(1264958-1265060)
chr7 (204-252)||(1261992-1262040)
[»] chr8 (3 HSPs)
chr8 (54-259)||(13083589-13083795)
chr8 (92-250)||(41388878-41389037)
chr8 (112-200)||(32612370-32612459)
[»] scaffold1603 (1 HSPs)
scaffold1603 (87-250)||(911-1074)
[»] scaffold0027 (1 HSPs)
scaffold0027 (108-259)||(21905-22054)


Alignment Details
Target: scaffold0009 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 257 - 551
Target Start/End: Complemental strand, 24161 - 23867
Alignment:
Q  257 ccggttaagggtatctttgatgaaatagagatccctcataacaccagttggatttatcttcatttgttcctttcatcaactttatggttgccaatataca 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24161 ccggttaagagtatctttgatgaaatagagatccctcataacaccagttggatttatcttcatttcttcctttcatcaactttatggttgccaatataca 24062  T
Q  357 gctaatatactctctaattttaataactctatgatttctaaaattgaaattgattatagctgatcaatcatggagtcagtccttcattgatggaaaattt 456  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24061 ggtaatatactctctaattttaataactctatgatttctaaaattgaaattgattatagctgatcaatcatggagtcagtccttcattggtggaaaattt 23962  T
Q  457 gaagataggtgttcaagaatttatgagtcttccggtggaagagaagaagaaactttggcaaactccggaagatatagacgggtttggtcaattgt 551  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23961 gaagataggtgttcaagaattcatgagtcgtccggtggaagagaagaagaaactttggcaaactccggaagatatagaggggtttggtcaattgt 23867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 24179 - 24151
Alignment:
Q  19 ataactcaagatccagcaccggttaagag 47  Q
    |||||||||||||||||||||||||||||    
T  24179 ataactcaagatccagcaccggttaagag 24151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 46336302 - 46336512
Alignment:
Q  48 gggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  46336302 gggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtg 46336401  T
Q  148 aaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagca 247  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  46336402 aaattattgaaatttgtgctgtgaattggaaccgtcaaatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 46336501  T
Q  248 aatcctgatcc 258  Q
    |||||||||||    
T  46336502 aatcctgatcc 46336512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 49 - 261
Target Start/End: Complemental strand, 32495933 - 32495721
Alignment:
Q  49 ggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtga 148  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  32495933 ggatgagattttctactgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtga 32495834  T
Q  149 aattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaa 248  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  32495833 aattattgaaatttgtgttgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaa 32495734  T
Q  249 atcctgatccggt 261  Q
    |||||||||||||    
T  32495733 atcctgatccggt 32495721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 19596172 - 19595971
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| || |||||     
T  19596172 ggatttcctgctgtaatatttacacgcagttacacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgatattgtgtaaaattg 19596073  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcct 253  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  19596072 ttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacaacagcaaatcct 19595973  T
Q  254 ga 255  Q
    ||    
T  19595972 ga 19595971  T

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Target: chr1; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 43997355 - 43997150
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    |||||| |||||||||   ||||||||||||| | |||||||||||| | ||| |||||||||||| |||||||||| ||||||| |||| ||||||||     
T  43997355 ggattttctgctgtaaatattacacgcagttgtaggctgtagttgttttgcaccgtctgatctgaaatgaacggttatgatctgatattgtgtgaaattg 43997256  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcct 253  Q
    ||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||| ||| ||||||  |||| |||||||||||||||||||||||||||     
T  43997255 ttgaaatatgtgctgtgaattgaaaccgtcagatcatgaattgatggctgagatttgcaactgcgataaactgtgtgaatttgctacagcagcaaatcca 43997156  T
Q  254 gatccg 259  Q
    ||||||    
T  43997155 gatccg 43997150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 43632844 - 43633013
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    |||||| |||||||||   |||||||||||||||||||||||||||||| |||  |||||| | || ||||||||||||||||||||||| ||||||||     
T  43632844 ggattttctgctgtaaatattacacgcagttgcacgctgtagttgttctgcaccatctgatttaaaatgaacggttaagatctgacattgtgtgaaattg 43632943  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaa 223  Q
    ||||| || ||| |||||||||||||||||| ||||||||||||||| |||||| |||||| || |||||    
T  43632944 ttgaatttcgtgctgtgaattggaaccgtcagatcatggattgatggttgagatttgctacagcagcaaa 43633013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 11692536 - 11692661
Alignment:
Q  133 atctgacattgcgtgaaattattgaaatttgtgttgtgaattggaaccg-tcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtga 231  Q
    |||||| |||| |||||||| |||||||  || ||||||||| ||| || |||  | ||||||||||||||||||| | ||||| | |||||| | ||||    
T  11692536 atctgatattgtgtgaaattgttgaaatcggtattgtgaatttgaaacgatcaggttatggattgatggctgagattttctactacagcaaactgcgtga 11692635  T
Q  232 atttgctacagcagcaaatcctgatc 257  Q
    |||||||||| ||||| |||| ||||    
T  11692636 atttgctacaccagcatatccagatc 11692661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 19887028 - 19887076
Alignment:
Q  210 gctactgcggcaaaccgtgtgaatttgctacagcagcaaatcctgatcc 258  Q
    ||||||||||||||| |||||||||||||||| ||| |||||| |||||    
T  19887028 gctactgcggcaaactgtgtgaatttgctacaacagtaaatccagatcc 19887076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 38953699 - 38953659
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtag 95  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  38953699 ggatttgctgctgtaa-atttacacgcagttgcacgctgtag 38953659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 23594728 - 23594519
Alignment:
Q  49 ggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  23594728 ggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatatgacattgtgtga 23594629  T
Q  149 aattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaa 248  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  23594628 aattgttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaa 23594529  T
Q  249 atcctgatcc 258  Q
    ||||||||||    
T  23594528 atcctgatcc 23594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 26377806 - 26378010
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||     
T  26377806 ggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaatggttaagatctgacattgtgtgaaattg 26377905  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcct 253  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| || ||||||||    
T  26377906 ttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatgactgagatttgctactgcggcaaactgtgtgaatttgctacaacaacaaatcct 26378005  T
Q  254 gatcc 258  Q
    |||||    
T  26378006 gatcc 26378010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 14277414 - 14277210
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    ||||||||||||||| |||||||||  ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||||     
T  14277414 ggatttcctgctgta-tatttacacttagttgcacgctatagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgttaaattg 14277316  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcct 253  Q
    |||||||| ||| |||||||||||| ||||| |||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  14277315 ttgaaattcgtgctgtgaattggaatcgtcagatcatgaattgacggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcct 14277216  T
Q  254 gatccg 259  Q
    ||||||    
T  14277215 gatccg 14277210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 49 - 258
Target Start/End: Original strand, 12240558 - 12240767
Alignment:
Q  49 ggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtga 148  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  12240558 ggatgggatttcctgctgtaatatttacacgcagttgcacgttgtagctgttctacaccgtctgatctgaagtgaacgattaagatctgacattgtgtga 12240657  T
Q  149 aattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaa 248  Q
    |||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  12240658 aattgttgaaatttatgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaa 12240757  T
Q  249 atcctgatcc 258  Q
    ||||||||||    
T  12240758 atcctgatcc 12240767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 49620577 - 49620784
Alignment:
Q  51 atgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaa 150  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||    
T  49620577 atgggatttcctgctgtaatatttacatgcagttgtacgttgtagttgttctacaccgtctgatctgaagtgaaacgttaagatctgacattgtgtgaaa 49620676  T
Q  151 ttattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaat 250  Q
    || |||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||    
T  49620677 ttgttgaaatttgtgctgtaaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactatgtgaatttgctacagcaacaaat 49620776  T
Q  251 cctgatcc 258  Q
    ||||||||    
T  49620777 cctgatcc 49620784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 54 - 252
Target Start/End: Complemental strand, 23666789 - 23666591
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    ||||||||||||||||   ||||| |||||||  | ||||||||||| | ||| ||||||| ||||||||||||| |||||||||||||| ||||||||     
T  23666789 ggatttcctgctgtaaatattacaggcagttgtccactgtagttgttttgcaccgtctgatttgaagtgaacggtcaagatctgacattgtgtgaaattg 23666690  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcc 252  Q
    |||||||  |||||| ||||||||||||||  || ||||||||||| ||||||| | || || |||||||| |||||||||||||||||||||||||||    
T  23666689 ttgaaatccgtgttgcgaattggaaccgtcggattatggattgatgactgagattttctcctacggcaaactgtgtgaatttgctacagcagcaaatcc 23666591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 24851012 - 24851110
Alignment:
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcc 252  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||| |||| |||||||||||||||||||||||||||    
T  24851012 ttgaaatctgtgttgtgaattggaaccgtcagatcatggattgatggatgagatttactactgcggaaaactgtgtgaatttgctacagcagcaaatcc 24851110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 47895535 - 47895655
Alignment:
Q  121 tgaacggttaagatctgacattgcgtgaaattattgaaatttgtgttgtgaattggaa-ccgtcatatcatggattgatggctgagatgtgctactgcgg 219  Q
    ||||| |||||||||| |||||| |||| | |||||||| ||||| | |||||| ||| |||||||| ||| ||| |||||||||  | ||||| | |||    
T  47895535 tgaacagttaagatctaacattgtgtgacactattgaaaattgtgctatgaatttgaaaccgtcataacatagatcgatggctgacctttgctattacgg 47895634  T
Q  220 caaaccgtgtgaatttgctac 240  Q
    ||||  |||||||||||||||    
T  47895635 caaatggtgtgaatttgctac 47895655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 54 - 259
Target Start/End: Original strand, 45903313 - 45903518
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||||     
T  45903313 ggatttcctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtaaaattg 45903412  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcct 253  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  45903413 ttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcct 45903512  T
Q  254 gatccg 259  Q
    ||||||    
T  45903513 gatccg 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 41570109 - 41570066
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagtt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41570109 ggatttcctgctgtaatatttacacgcagttgcacgctgtagtt 41570066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 38992705 - 38992909
Alignment:
Q  54 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatta 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  38992705 ggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtgtgaaatta 38992804  T
Q  154 ttgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcct 253  Q
    ||||||| |||| | ||||||| |||| ||| ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  38992805 ttgaaatctgtgctttgaattgcaaccttcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcct 38992904  T
Q  254 gatcc 258  Q
    |||||    
T  38992905 gatcc 38992909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 26692003 - 26692055
Alignment:
Q  200 gctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcc 252  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  26692003 gctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatcc 26692055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 26691990 - 26691907
Alignment:
Q  173 ttggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcctgatcc 258  Q
    ||||| |||||||||||||||||| ||||||| || ||||||||||||  || || ||||||||||||||||| |||||| |||||    
T  26691990 ttggacccgtcatatcatggattgctggctgaaatttgctactgcggc--actgtttgaatttgctacagcagtaaatccagatcc 26691907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 39305668 - 39305458
Alignment:
Q  48 gggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||| ||||||||  ||    
T  39305668 gggatgggatttcctgctgtaatatttacacgcagttgcacgccgtagctgttctataccgtctgatctgaagtgaacggttaagatttgacattgtatg 39305569  T
Q  148 aaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagca 247  Q
    ||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  39305568 aaattgttgaaatttgtgctgtaaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 39305469  T
Q  248 aatcctgatcc 258  Q
    |||||||||||    
T  39305468 aatcctgatcc 39305458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 9625641 - 9625448
Alignment:
Q  48 gggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtg 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  9625641 gggatgggatttactgctgtaatatttacacgcagttgcacgctttagctgttctacaccgtctaatctgaagtgaacggttaagatctgacattgcgtg 9625542  T
Q  148 aaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctaca 241  Q
    ||||| ||||||| |||||| |||||||||||||||| ||||||||||||| ||||| || |||||||||| ||||| ||||||||||||||||    
T  9625541 aaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctactgcgacaaactgtgtgaatttgctaca 9625448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 17539962 - 17540140
Alignment:
Q  46 aggggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcg 145  Q
    |||||||||||||| ||||||||||||||||||||          ||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |    
T  17539962 aggggatgggatttgctgctgtaatatttacacgc----------tgtagctgttctacaccgtctgatctgaagtgaacggttaagatttgacattgtg 17540051  T
Q  146 tgaaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatt 234  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  17540052 tgaaattgttgaaatttgtgctgtgaattggaaccgtcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatt 17540140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 389 - 551
Target Start/End: Original strand, 22927880 - 22928042
Alignment:
Q  389 gatttctaaaattgaaattgattatagctgatcaatcatggagtcagtccttcattgatggaaaatttgaagataggtgttcaagaatttatgagtcttc 488  Q
    ||||||||||||| ||| |||||| || |||| ||||| ||||||  || || |||| |||||||| |||||||||| |||||||| ||  | |||||||    
T  22927880 gatttctaaaattcaaaatgattacagttgattaatcacggagtcgatcatttattggtggaaaatgtgaagataggggttcaagagttcttaagtcttc 22927979  T
Q  489 cggtggaagagaagaagaaactttggcaaactccggaagatatagacgggtttggtcaattgt 551  Q
    |||||||||||||||||||| |  |||||||||| ||||||||  | ||||||||||||||||    
T  22927980 cggtggaagagaagaagaaattacggcaaactccagaagatatgcaggggtttggtcaattgt 22928042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 23023030 - 23022902
Alignment:
Q  390 atttctaaaattgaaattgattatagctgatcaatcatggagtcagtccttcattgatggaaaatttgaagataggtgttcaagaatttatgagtcttcc 489  Q
    |||||||||||| ||| |||||| || |||| ||||| ||||||  ||||| |||| |||||||| ||||||||||||||||||| ||  | ||||||||    
T  23023030 atttctaaaattcaaaatgattacagttgattaatcacggagtcgatcctttattggtggaaaatgtgaagataggtgttcaagagttcctaagtcttcc 23022931  T
Q  490 ggtggaagagaagaagaaactttggcaaa 518  Q
      ||||||||||||||||| |||||||||    
T  23022930 attggaagagaagaagaaattttggcaaa 23022902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 21263149 - 21263246
Alignment:
Q  422 aatcatggagtcagtccttcattgatggaaaatttgaagataggtgttcaagaatttatgagtcttccggtggaagagaagaagaaactttggcaaac 519  Q
    ||||||||||||| ||| |||||| |||||||| ||||||||||||||||||| ||  | | |||| | || || || ||||||||| ||||||||||    
T  21263149 aatcatggagtcaatccctcattggtggaaaatgtgaagataggtgttcaagagttcttaaatctttctgtagatgaaaagaagaaattttggcaaac 21263246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 21249013 - 21249116
Alignment:
Q  419 atcaatcatggagtcagtccttcattgatggaaaatttgaagataggtgttcaagaatttatgagtcttccggtggaagagaagaagaaactttggcaaa 518  Q
    ||||| ||||||||||   |||| ||||| |||||  | ||||||||| || |||||||  | || || || |||||||||||||||||| |||||||||    
T  21249013 atcaaccatggagtcaacacttcgttgattgaaaaggtaaagataggtattaaagaattcttaagcctaccagtggaagagaagaagaaattttggcaaa 21249112  T
Q  519 ctcc 522  Q
    ||||    
T  21249113 ctcc 21249116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 519
Target Start/End: Original strand, 21350409 - 21350479
Alignment:
Q  449 gaaaatttgaagataggtgttcaagaatttatgagtcttccggtggaagagaagaagaaactttggcaaac 519  Q
    |||||| |||||||||||||| || ||||| | |  |||||  ||||||||||||||||| ||||||||||    
T  21350409 gaaaatatgaagataggtgttgaacaatttctcaaacttccaatggaagagaagaagaaattttggcaaac 21350479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 8e-81; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 14792549 - 14792361
Alignment:
Q  46 aggggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcg 145  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |    
T  14792549 aggggatgggatttgctgctgtaatatttacacgcagttgcacgctgtagctgttctacaccgtctgatctgaagtgaacggttaagatctgacattgtg 14792450  T
Q  146 tgaaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatt 234  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  14792449 tgaaattgttgaaatttgtgttgtgaattggaaccgtcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatt 14792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 4926311 - 4926101
Alignment:
Q  48 gggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtg 147  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||    
T  4926311 gggatgggatttcctgctgtaatatttacacgcagttgtacgctgtagctgttgtacaccgtctgatctgaagtgaacggttaagatctgacattgtgtg 4926212  T
Q  148 aaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagca 247  Q
    ||||| |||||||||||| |  ||||| ||||||| | |||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||    
T  4926211 aaattgttgaaatttgtgctacgaattagaaccgttagatcatggattgatggctgagatttgctacagcagcaaactgtgtgaatttgctacagcagca 4926112  T
Q  248 aatcctgatcc 258  Q
    |||||||||||    
T  4926111 aatcctgatcc 4926101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 47 - 258
Target Start/End: Original strand, 19680929 - 19681140
Alignment:
Q  47 ggggatgggatttcctgctgtaatatttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgt 146  Q
    ||||||||||||||| |||||||||||||| |||||||  ||||||||| |||||||||| |||||||||||| |||| ||||||||| ||| |||| ||    
T  19680929 ggggatgggatttccagctgtaatatttacccgcagttatacgctgtagctgttctacaccgtctgatctgaaatgaatggttaagatttgatattgtgt 19681028  T
Q  147 gaaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagc 246  Q
    |||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | |     
T  19681029 gaaattgttaaaatttatgttgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacaacggt 19681128  T
Q  247 aaatcctgatcc 258  Q
    ||||||||||||    
T  19681129 aaatcctgatcc 19681140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 41985279 - 41985446
Alignment:
Q  91 tgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaattattgaaatttgtgttgtgaattggaaccgtcatatcat 190  Q
    ||||| |||||| ||| || ||||||||||||| |||| ||||||||||||||  ||||||| |||||||  |||||||||||||||||||||  |||||    
T  41985279 tgtagctgttctgcaccgtttgatctgaagtgagcggtcaagatctgacattgtatgaaattgttgaaatccgtgttgtgaattggaaccgtcggatcat 41985378  T
Q  191 ggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcctgatcc 258  Q
    ||||||||||||||||| |||||||||| ||||  ||||||||||||||| ||||||||||| |||||    
T  41985379 ggattgatggctgagatttgctactgcgacaaattgtgtgaatttgctacggcagcaaatccagatcc 41985446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 7260402 - 7260258
Alignment:
Q  108 gtctgatctgaagtgaacggttaagatctgacattgcgtgaaattattgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagat 207  Q
    ||||||||| || |||| ||||||||||||||||||  ||||||| || |||| | || ||| ||||| ||| |||| ||||| ||||||||||||||||    
T  7260402 gtctgatctaaaatgaatggttaagatctgacattgtatgaaattgttaaaatctttgctgtaaattgaaacagtcagatcatagattgatggctgagat 7260303  T
Q  208 gtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcc 252  Q
     | |||||||||||||| |||||||||||||| ||||||||||||    
T  7260302 ttactactgcggcaaactgtgtgaatttgctatagcagcaaatcc 7260258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 1264958 - 1265060
Alignment:
Q  157 aaatttgtgttgtgaattggaa-ccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcctga 255  Q
    |||| |||| |||||||| ||| || ||| |||||| ||||||||||||||| | ||| |   |||||| || |||||||||||||||||||||||| ||    
T  1264958 aaatctgtgctgtgaatttgaaaccatcagatcatgaattgatggctgagatttactattatagcaaactgtttgaatttgctacagcagcaaatccaga 1265057  T
Q  256 tcc 258  Q
    |||    
T  1265058 tcc 1265060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 1262040 - 1261992
Alignment:
Q  204 agatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcc 252  Q
    |||| |||||||||||||||| ||||||||||| |||| || |||||||    
T  1262040 agatttgctactgcggcaaactgtgtgaatttggtacaacaacaaatcc 1261992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 13083795 - 13083589
Alignment:
Q  54 ggatttcctgctgtaatat-ttacacgcagttgcacgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaatt 152  Q
    |||||| ||||||||| || |||||||||||||||| |||||| |||||| ||| | |||||||||| ||||| | | ||||||||||||| ||||||||    
T  13083795 ggattttctgctgtaaaatattacacgcagttgcacactgtagctgttctgcaccgcctgatctgaactgaacagctcagatctgacattgtgtgaaatt 13083696  T
Q  153 attgaaatttgtgttgtgaattggaaccgtcatatcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcc 252  Q
     |||||||  ||| |||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||| |||| ||||||||||| ||| ||||||    
T  13083695 gttgaaatccgtgctgtgaattggaaccatcagatcatggattgatcgctgagatttgctactgcggcaaactgtgtaaatttgctacaacagtaaatcc 13083596  T
Q  253 tgatccg 259  Q
     ||||||    
T  13083595 agatccg 13083589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 41389037 - 41388878
Alignment:
Q  92 gtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaattattgaaatttgtgttgtgaattg-gaaccgtcatatcat 190  Q
    |||||||||||  || ||| |||| ||| |||| ||| ||||||||| | |  || ||||| |||||||  | | ||||||||  |||||||||||||||    
T  41389037 gtagttgttctctaccgtccgatccgaaatgaatggtcaagatctgatactatgtaaaattgttgaaatccgagatgtgaatttagaaccgtcatatcat 41388938  T
Q  191 ggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaat 250  Q
      ||||||||  ||||| |||||||||| |||||||||||||||||||||| || |||||    
T  41388937 aaattgatggtcgagatttgctactgcgacaaaccgtgtgaatttgctacaacatcaaat 41388878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 32612459 - 32612370
Alignment:
Q  112 gatctgaagtgaacggttaagatctgacattgcgtgaaattattgaaatttgtgttgtgaa-ttggaaccgtcatatcatggattgatgg 200  Q
    ||||||||||||||||| ||||||| | |||  || |||||||||||||| ||| |||||| |||| ||||||  |||||||||||||||    
T  32612459 gatctgaagtgaacggtcaagatctaatattatgtaaaattattgaaattcgtgatgtgaatttgggaccgtcggatcatggattgatgg 32612370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 911 - 1074
Alignment:
Q  87 acgctgtagttgttctacactgtctgatctgaagtgaacggttaagatctgacattgcgtgaaattattgaaatttgtgttgtgaattggaaccgtcata 186  Q
    ||||||||  ||||||  || ||||||||||||||||||||| |||||||||||||| || ||||| |||||||  ||| |||||||||||||||||| |    
T  911 acgctgtaactgttctgtaccgtctgatctgaagtgaacggtcaagatctgacattgtgtaaaattgttgaaatccgtgctgtgaattggaaccgtcaga 1010  T
Q  187 tcatggattgatggctgagatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaat 250  Q
    ||||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  1011 tcatgaattgatggttgagatttgctactgcgacaaactgtgtgaatttgctacagcagcaaat 1074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 21905 - 22054
Alignment:
Q  108 gtctgatctgaagtgaacggttaagatctgacattgcgtgaaattattg---aaatttgtgttgtgaattggaaccgtcatatcatggattgatggctga 204  Q
    |||||||||||| |||||||||||||||| | |||| || |||||||||   |||| ||| ||||||||||||||||||| |||||||||||||||        
T  21905 gtctgatctgaattgaacggttaagatctaatattgtgtaaaattattgttaaaatctgtattgtgaattggaaccgtcagatcatggattgatgg---- 22000  T
Q  205 gatgtgctactgcggcaaaccgtgtgaatttgctacagcagcaaatcctgatccg 259  Q
     || |||||||||  ||||| ||||||||||| |||| || ||||||| ||||||    
T  22001 -atttgctactgcaacaaactgtgtgaatttgttacaacaacaaatccagatccg 22054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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