View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18231_low_5 (Length: 561)
Name: NF18231_low_5
Description: NF18231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18231_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 24777484 - 24776943
Alignment:
| Q |
16 |
acaagattgctgagatgggttatgttaggttctatctagctcccaaaatagaggaagatgatgaagaaaccaagcccgaagtttagttggatatagatgt |
115 |
Q |
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| T |
24777484 |
acaagattgctgagatgggttatgttaggttctatctagctcccaaaatagaggaagatgatgaagaaaccaagcccgaagtttagttggatatagatgt |
24777385 |
T |
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| Q |
116 |
tggattggcatcttaggttttgaatttgattgtagttttaggatgcttttatacattatcaagctattgcgtatgtttgcctatctctgaatttggaaga |
215 |
Q |
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| T |
24777384 |
tggattggcatcttaggttttgattttgattgtagttttaggacgcttttatacattatcaaggtattgcgtatgtttgcctatctctgaatttggaaga |
24777285 |
T |
|
| Q |
216 |
ggtgtgcatgtcacattattttctacctcgtttaaatcaatgttaaacaatggatgtgcattctccactctagggccttttattttattgcttttatgca |
315 |
Q |
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| T |
24777284 |
ggtgtgcatgtcacattattttctacctcgtttaaatcaatgttaaacaatggatgtgcattctccactgtagggccttttattttattgcttttatgca |
24777185 |
T |
|
| Q |
316 |
tctgaacagctttcaaactaaatgtggaatcttggaagagtttgaaattaacagtcaagtttgttgatttgtttgtttctcctattttaatttcatgtta |
415 |
Q |
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| T |
24777184 |
tctgaacagctttcaaactaaatgtggaatcttggaagagtttgaaattaacagtcaagtttgttgatttgtttgtttctcctgttttaatttcatgtta |
24777085 |
T |
|
| Q |
416 |
ttaaacattgcctaatggttgttgtggaatacaattgaaaagaacaaaggtgttaatgccacaatctgtagaatattaaactgaggtacttggtaatgta |
515 |
Q |
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| T |
24777084 |
ttaaacattgcctaatggttgttgtggaatacaattgaaaagaacaaaggtgttaatgccacaatctgtagaatattaaactgaggtacttggtaatgta |
24776985 |
T |
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| Q |
516 |
ataatgtacacaattatactcaatcttcatttcttctctctc |
557 |
Q |
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| T |
24776984 |
ataatgtacacaattatactcaatcttcatttcttatctctc |
24776943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 411 - 535
Target Start/End: Complemental strand, 48922109 - 48921988
Alignment:
| Q |
411 |
tgttattaaacattgcctaatggttgttgtggaatacaattgaaaagaacaaaggtgttaatgccacaatctgtagaatattaaactgaggtacttggta |
510 |
Q |
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| T |
48922109 |
tgttattaaacaatgcctaatggttgt---ggaatgcaattgaaaagaacaaaggccttgatgccacaatctaaagaatattaaactaaggcgcttggtg |
48922013 |
T |
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| Q |
511 |
atgtaataatgtacacaattatact |
535 |
Q |
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| T |
48922012 |
atgcaataatgtacacaattatact |
48921988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 411 - 535
Target Start/End: Original strand, 48869475 - 48869599
Alignment:
| Q |
411 |
tgttattaaacattgcctaatggttgttgtggaatacaattgaaaagaacaaaggtgttaatgccacaatctgtagaatat---taaactgaggtacttg |
507 |
Q |
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| T |
48869475 |
tgttattaaacattgcctaatggttgt---ggaatgcaattgaaaagaacaaaggccttgatgccacaatctaaagaatattaataaattaaggcacttg |
48869571 |
T |
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| Q |
508 |
gtaatgtaataatgtacacaattatact |
535 |
Q |
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|| ||| ||||||||||||||||||||| |
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| T |
48869572 |
gtgatgcaataatgtacacaattatact |
48869599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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