View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18231_low_7 (Length: 394)
Name: NF18231_low_7
Description: NF18231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18231_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 47665112 - 47665494
Alignment:
| Q |
12 |
atgaaccttcaattatttctaaaatttgttaagacattagcctttgcgtatgaaccttgtgacttgtgagcttaatagctaaataaaatatctgtatttg |
111 |
Q |
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| T |
47665112 |
atgaaccttcaattatttctaaaatttgttaagacattagcctttgcgtatgaaccttgtgacttgtgagcttaatagctaaataaaatatctgtatttg |
47665211 |
T |
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| Q |
112 |
agtacaaaatgccaaaaaatagatcaattaaagttgcctccttaataaaattaaactgaattgacataccatttattctttagataatctccataaaaaa |
211 |
Q |
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| T |
47665212 |
agtacaaaatgccaaaaaatagatcaattaaagttgcctccttaaaaaaattaaactgaattgacataccatttattctttagataatctctataaaaaa |
47665311 |
T |
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| Q |
212 |
tgatagccttgagtaagcatgcatccaagttcagactgaggggaggttaaggtagccctgttctagggtcatggaatgtcataaaccttaacaaaaggtt |
311 |
Q |
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| T |
47665312 |
tgatagccttgagtaagcatgcatccaagttcagactgaggggaggttaaggtagccctgttctagggtcatggaatgtcataaaccttaacaaaaggtt |
47665411 |
T |
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| Q |
312 |
atgattgcactaatagattacctaccaatgaagtattacatgtggtgtttgaactcaagacctttttgttgacattgctttat |
394 |
Q |
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| T |
47665412 |
atgattgcactaatagattacctaccaatgaagtattacatgtggtatttgaactcaagacctttttgttgacattgctttat |
47665494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 394
Target Start/End: Original strand, 47665552 - 47665583
Alignment:
| Q |
363 |
aactcaagacctttttgttgacattgctttat |
394 |
Q |
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| T |
47665552 |
aactcaagacctttttgttgacattgctttat |
47665583 |
T |
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