View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18232_high_10 (Length: 415)

Name: NF18232_high_10
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18232_high_10
NF18232_high_10
[»] chr5 (1 HSPs)
chr5 (138-398)||(2166381-2166652)
[»] chr1 (3 HSPs)
chr1 (143-398)||(22168762-22169029)
chr1 (144-244)||(48493079-48493179)
chr1 (303-350)||(48493178-48493225)
[»] chr8 (2 HSPs)
chr8 (138-398)||(2420159-2420429)
chr8 (138-398)||(31872349-31872619)
[»] chr7 (2 HSPs)
chr7 (144-244)||(44554433-44554533)
chr7 (303-350)||(44554387-44554434)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 138 - 398
Target Start/End: Original strand, 2166381 - 2166652
Alignment:
Q  138 ttcagctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaattacaaaacacacataaaagctttccctttcatacccgctg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2166381 ttcagctctaaacccagaaatcctaaaacataaacttatcaaaatccataaattagtaattacaaaacacacataaaagctttccctttcatacccgctg 2166480  T
Q  238 caatttccggtgaaagtcatgagcaac-----------aatcaacaacgaacaatcgaaatccatacaggttcagatctaagattcaaaatttttccttt 326  Q
    |||||||| ||||||||||||||||||           || ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||    
T  2166481 caatttccagtgaaagtcatgagcaacaaccaacacagaaccaacaacgaacaatcgaaatccatacaagttcagatctaagattcaaaatgttcccttt 2166580  T
Q  327 caaaatcgaaatccataaaagcttcacatatttctttccagtatatgacgcaaagaaagatcctgttgtcac 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2166581 caaaatcgaaatccataaaagcttcacatatttctttccagtatatcacgcaaagaaagatcctgttgtcac 2166652  T

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Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 143 - 398
Target Start/End: Complemental strand, 22169029 - 22168762
Alignment:
Q  143 ctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaattacaaaacacacataaaagctttccctttcatacccgctgcaatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22169029 ctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaatcacaaaacacacataaaagctttccctttcatacccgctgcaatt 22168930  T
Q  243 tccggtgaaagtcatgagcaac-----------aatcaacaacg-aacaatcgaaatccatacaggttcagatctaagattcaaaatttttcctttcaaa 330  Q
    ||| ||||||||||||||||||           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  22168929 tccagtgaaagtcatgagcaacaaccaacacagaaccaacaacgaaacaatcgaaatccatacaggttcagatctaagattcaaaattttccctttaaaa 22168830  T
Q  331 atcgaaatccataaaagcttcacatatttctttccagtatatgacgcaaagaaagatcctgttgtcac 398  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  22168829 atcgaaatccataaaagcttcacatatttctttccagtatatcacgcaaagaaagatcatgttgtcac 22168762  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 48493079 - 48493179
Alignment:
Q  144 tctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaattacaaaacacacataaaagctttccctttcatacccgctgcaattt 243  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| | |||||||||    
T  48493079 tctaaacccagaaatcataaaacataaatctatcaaaatccacaaatcagtaatcacaaaacacacataaaagctttctctttcatacacactgcaattt 48493178  T
Q  244 c 244  Q
    |    
T  48493179 c 48493179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 48493178 - 48493225
Alignment:
Q  303 tctaagattcaaaatttttcctttcaaaatcgaaatccataaaagctt 350  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  48493178 tctaagattcaaaattttccctttcaaaatcaaaatccataaaagctt 48493225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 138 - 398
Target Start/End: Original strand, 2420159 - 2420429
Alignment:
Q  138 ttcagctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaattacaaaacacacataaaagctttccctttcatacccgctg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  2420159 ttcagctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaatcacaaaacacacataaaagctttccctttcatacctgctg 2420258  T
Q  238 caatttccggtgaaagtcatgagcaac-----------aatcaacaacgaacaatcgaaatccatacaggttcagatctaagattcaaaatttttccttt 326  Q
    |||||||| ||||||||||||||||||           || ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  2420259 caatttccagtgaaagtcatgagcaacaaccaacacagaaccaacaacgaacaatcgaaatccatacaggttaatatctaagattcaaaattttcccttt 2420358  T
Q  327 caaaatcgaaatccataaaagcttcacatatttctttccagtatatgacgcaaagaaagatcctgttgtcac 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  2420359 caaaatcgaaatccataaaagcttcacatatttctttccagtata-cacgtaaagaaagatcctgttgtcac 2420429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 138 - 398
Target Start/End: Complemental strand, 31872619 - 31872349
Alignment:
Q  138 ttcagctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaattacaaaacacacataaaagctttccctttcatacccgctg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  31872619 ttcagctctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaatcacaaaacacacatgaaagctttccctttcatacccgctg 31872520  T
Q  238 caatttccggtgaaagtcatgagcaac-----------aatcaacaacgaacaatcgaaatccatacaggttcagatctaagattcaaaatttttccttt 326  Q
    |||||| | ||||||||||||||||||           || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||  ||||    
T  31872519 caattttcagtgaaagtcatgagcaacaaccaacacataaccaacaacgaacaatcgaaatccatacagtttcagatataagattcaaaactttcacttt 31872420  T
Q  327 caaaatcgaaatccataaaagcttcacatatttctttccagtatatgacgcaaagaaagatcctgttgtcac 398  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||  ||||||||||| ||| |||||||||    
T  31872419 caaaatcgaaatccataaaagcttcgcatatttctttccgatata-cacgcaaagaaaaatcatgttgtcac 31872349  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 44554533 - 44554433
Alignment:
Q  144 tctaaacccagaaatcctaaaacataaacttatcaaaatccacaaattagtaattacaaaacacacataaaagctttccctttcatacccgctgcaattt 243  Q
    |||||||||| ||||| |||||||||||  ||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||| |  ||||||||    
T  44554533 tctaaacccataaatcataaaacataaatctatcaaaatccacaaatcagtaatcacaaaacacacgtaaaagctttctctttcatacacattgcaattt 44554434  T
Q  244 c 244  Q
    |    
T  44554433 c 44554433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 44554434 - 44554387
Alignment:
Q  303 tctaagattcaaaatttttcctttcaaaatcgaaatccataaaagctt 350  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||    
T  44554434 tctaagattcaaaattttccctttcaaaatcaaaattcataaaagctt 44554387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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