View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_11 (Length: 401)
Name: NF18232_high_11
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 2470740 - 2470373
Alignment:
| Q |
17 |
cagagacaccttagtttgtacaaaaatttctgtcagtgtatttggatgagtcctttgatttatatcatcacttattttctttggactcgtcttcttttac |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2470740 |
cagacacaccttagtttgtacaaaaatttctgtcagtgtatttggatgagtcctttgatttatatcatcacttattttctttggacttgtcttcttttac |
2470641 |
T |
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| Q |
117 |
cttgtacagccgctgctgacagaaaattctgtgtgctgcttctgcactgtagtctattgaattcagtgtagtctattaactcaaacatagataatagatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470640 |
cttgtacagccgctgctgacagaaaattctgtgtgctgcttctgcactgtagtctattgaattcagtgtagtctattaactcaaacatagataatagatt |
2470541 |
T |
|
| Q |
217 |
atttttgtgaccgatcatatttaaaattcattgaattgatttgattcttatcataagaataagatacttactacctattcttgttagcttaccaaacggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470540 |
atttttgtgaccgatcatatttaaaattcattgaattgatttgattcttatcataagaataagatacttactacctattcttgttagcttaccaaacggt |
2470441 |
T |
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| Q |
317 |
aatacaaggatggcagaagtagtaggaaatgttaatatttcagatggtctaaaccttaaggatgtttt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470440 |
aatacaaggatggcagaagtagtaggaaatgttaatatttcagatggtctaaaccttaaggatgtttt |
2470373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 2458817 - 2458672
Alignment:
| Q |
229 |
gatcatatttaaaattcattgaattgatttgattcttatcataagaataagatacttactacctattcttgttagcttaccaaacggtaatacaaggatg |
328 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
2458817 |
gatcatattttaaattcattgaattgatttgattcttatcataaaaataagatacttactacctattcctattagcttaccaaacggtaatacaaggat- |
2458719 |
T |
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| Q |
329 |
gcagaagtagtaggaaatgttaatatttcagatggtctaaaccttaaggatgtt |
382 |
Q |
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| T |
2458718 |
-------ttgtaggaaatgttaatatttcagatggcctaaacgttaaggatgtt |
2458672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 2498597 - 2498547
Alignment:
| Q |
246 |
attgaattgatttgattcttatcataagaataagatacttactacctattc |
296 |
Q |
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| T |
2498597 |
attgaattgatttgattcttaacataagaataagatacttactacctattc |
2498547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 2498543 - 2498500
Alignment:
| Q |
339 |
taggaaatgttaatatttcagatggtctaaaccttaaggatgtt |
382 |
Q |
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| T |
2498543 |
taggaaatgttaatatttcagacggtctaaaccttaaggatgtt |
2498500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 43282068 - 43282130
Alignment:
| Q |
56 |
atttggatgagtcctttgatttatatcatcacttattttctttggactcgtcttcttttacctt |
119 |
Q |
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||||||| |||| ||||| |||||| || || ||||||||||||||| |||||||||||||||| |
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| T |
43282068 |
atttggacgagttctttgctttata-caacatttattttctttggacccgtcttcttttacctt |
43282130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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