View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_14 (Length: 355)
Name: NF18232_high_14
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 109 - 335
Target Start/End: Original strand, 9706193 - 9706419
Alignment:
| Q |
109 |
tttttgaggaatattagggaaaaggtgaaagagatagaaaaggagagatttttacttgaggagtgaacattaaaggagattgagttgttctagggctagc |
208 |
Q |
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| T |
9706193 |
tttttgaggaatactatggaaaaggtgaaagagatagaaaaggagagatttttacttgaggagtgaacattaaaggagattgagttgttctagggctagc |
9706292 |
T |
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| Q |
209 |
aggtggagaatgacccattaactcaacaggtgaaggattttcaacaaccccatcaggtgcagacatggaatcactgacttctgatgatgttgatgaagct |
308 |
Q |
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| T |
9706293 |
aggtggagaatgacccattaactcaacaggtgaaggattttcaacaaccccatcaggtgcagacatggaatcactgacttctgatgatgttgatgaagct |
9706392 |
T |
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| Q |
309 |
gatgatagtgttccgttgaaatcttct |
335 |
Q |
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| T |
9706393 |
gatgatagtgttccattgaaatcttct |
9706419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 9706074 - 9706163
Alignment:
| Q |
2 |
aacatcaaatcaaaaacaaaacctaaggtactgaatcagacacacccatttatcaaaaaacaaactttatgagttttcacaaactaaatt |
91 |
Q |
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| T |
9706074 |
aacatcaaatcaaaaacaaaacctaaggtactgaatcagacacacccatttatcaaaaaacaaactttatgagttttcacaaactaaatt |
9706163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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