View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_15 (Length: 336)
Name: NF18232_high_15
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 37973312 - 37973540
Alignment:
| Q |
15 |
gaaagtgtgattcaaataggagtgttgcacatggaaaaattgccatccctagccaacaactctatatacatgcatgtttttcatgttagtgtattcttct |
114 |
Q |
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| T |
37973312 |
gaaagtgtgattcaaataggagtgttgcacatggaaaaattgccatccctagccaacaactctatatacatgcatgtttttcatgttagtgtattcttct |
37973411 |
T |
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| Q |
115 |
ctcgagttaccatatattgacatcacttttatgacaatttttgcaataacctaaaaatatataccccttatgatatagtggcatggtgttttggaactct |
214 |
Q |
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| T |
37973412 |
ctcgagttaccatatattaacatcacttttatgacaatttttgcaacaacctaaaattatataccccttatgatatagtggcatggtgttttggaactat |
37973511 |
T |
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| Q |
215 |
tctttagaaaataaaaagtgttttggaac |
243 |
Q |
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| T |
37973512 |
tctttagaaaatagaaagtgttttggaac |
37973540 |
T |
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Back To:
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 11038663 - 11038584
Alignment:
| Q |
126 |
atatattgacatcacttttatgacaatttttgcaataacctaaaaatatataccccttatgatatagtggcatggtgtttt |
206 |
Q |
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| T |
11038663 |
atatattgacatctattttgtgacaacttttccaacaacctagaaatccatacccc-tatgatatattggcatggtgtttt |
11038584 |
T |
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