View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_18 (Length: 320)
Name: NF18232_high_18
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 41066136 - 41065827
Alignment:
| Q |
1 |
cgacaattcccaaaaaggtccaacagggcagtcagtttttcatgccttactgggagaaggtatacttaactcagatggtgacaggtggctgttccagcga |
100 |
Q |
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|||||||| || ||||||||||||| |||||||||| ||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
41066136 |
cgacaattacccaaaaggtccaacatggcagtcagtgtttcatgacttactcggagaaggtatatttaactcagatggtgacatgtggctgttccagcgt |
41066037 |
T |
|
| Q |
101 |
aaaaccgccgcactagagttcaccactcgtaccctacgacaagccatggctcgatgggttagccgagccataaagtatagattctgtccaatattagcga |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41066036 |
aaaaccgcagcactagagttcaccactcgtaccctacgacaagccatggctcgatgggttagccgagccataaagtatagattctgtccaattttagcga |
41065937 |
T |
|
| Q |
201 |
cggcacaagaagnnnnnnncccggttgatcttcaagaccttctcctacgcctcactttcgacaacatatgtggcttggctttcggtcaagatccacaaac |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41065936 |
cggcacaagaagaaaaaaacccggttgatcttcaagaccttctcctacgcctcactttcgacaacatatgtggcttggctttcggtcaagatccacaaac |
41065837 |
T |
|
| Q |
301 |
actgtctgtg |
310 |
Q |
| |
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|||||||||| |
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| T |
41065836 |
actgtctgtg |
41065827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 11314588 - 11314693
Alignment:
| Q |
66 |
ttaactcagatggtgacaggtggctgttccagcgaaaaaccgccgcactagagttcaccactcgtaccctacgacaagccatggctcgatgggttagccg |
165 |
Q |
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||||||| |||||| ||| |||| |||||||||| || || ||||| || || |||||||| ||||| | || |||||||||||| ||||||||||||| |
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| T |
11314588 |
ttaactctgatggtaacacgtgggtgttccagcgcaagacagccgcgctggaattcaccacgcgtactttgcgccaagccatggctagatgggttagccg |
11314687 |
T |
|
| Q |
166 |
agccat |
171 |
Q |
| |
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|||||| |
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| T |
11314688 |
agccat |
11314693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 25243263 - 25243363
Alignment:
| Q |
74 |
gatggtgacaggtggctgttccagcgaaaaaccgccgcactagagttcaccactcgtaccctacgacaagccatggctcgatgggttagccgagccataa |
173 |
Q |
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|||||||||| ||||||| | || || |||||||| ||||| || ||||| ||||| ||||| || |||||||||||||| ||||| | |||| |||||| |
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| T |
25243263 |
gatggtgacacgtggctggttcaacgtaaaaccgctgcactcgaattcacaactcgaacccttcgtcaagccatggctcgttgggtgaaccgaaccataa |
25243362 |
T |
|
| Q |
174 |
a |
174 |
Q |
| |
|
| |
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|
| T |
25243363 |
a |
25243363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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