View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_19 (Length: 317)
Name: NF18232_high_19
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 54218767 - 54219065
Alignment:
| Q |
17 |
aaaacatagaattcttgcatagtagaaaaactttttcttgtgcatctcaaagtaatttgcactcctgtgcttgagttgcatggaatcatactctagtttc |
116 |
Q |
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| T |
54218767 |
aaaacatagaattcttgcatagtagaaaaactttttcttgtgcatctcaaagtagtttgcactcctgtgcttgagttgcatggaatcatactctagtttc |
54218866 |
T |
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| Q |
117 |
agaataaagttagttgagtaatttgaattccttctcatacagaacaaaatataagaaagg---------------aaaaaaggaaattcagtgaaatttg |
201 |
Q |
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| T |
54218867 |
agaataaagttagttgagtaatttgaattccttctcataaagaacaaaatataagaaaggaaaaaaaaaaaaaaaaaaaaaggaaattcagtgaaatttg |
54218966 |
T |
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| Q |
202 |
aagacgcaacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatc |
300 |
Q |
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| T |
54218967 |
aagacgcaacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatc |
54219065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 31217373 - 31217426
Alignment:
| Q |
208 |
caacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttc |
261 |
Q |
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| T |
31217373 |
caacttcccatgcctaaagcttgcaattggttcctcacatcagccagcttcttc |
31217426 |
T |
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