View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_22 (Length: 307)
Name: NF18232_high_22
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 106 - 290
Target Start/End: Complemental strand, 48972868 - 48972684
Alignment:
| Q |
106 |
ggcaaagggaaagttagggagaggtggtggccagtagacgaagaggttatcaaagcaaaacaacggtggaggagaacaccacattttgatgcaaactctg |
205 |
Q |
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| T |
48972868 |
ggcaaagggaaagttagggagaggtggtggccagtagacgaagaggttatcaaagcacaacaacggtggagaagaacaccacattttgatgcaaactctg |
48972769 |
T |
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| Q |
206 |
caacagtggcggcaatacaacaaggggcatgttgactcaacatacaacaaaatttgaaccttacaatactaaggctatagaggat |
290 |
Q |
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| T |
48972768 |
caacagtggcggcaatacaacaaggggcatgttgactcaacatacaacaaaatttgaaccttacaatactaaggctatagaggat |
48972684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 48972962 - 48972934
Alignment:
| Q |
12 |
acagagggaggggttcgacgaccacatga |
40 |
Q |
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| T |
48972962 |
acagagggaggggttcgacgaccacatga |
48972934 |
T |
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