View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18232_high_23 (Length: 298)

Name: NF18232_high_23
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18232_high_23
NF18232_high_23
[»] chr6 (15 HSPs)
chr6 (20-287)||(4561692-4561959)
chr6 (20-289)||(4575483-4575752)
chr6 (20-187)||(4481995-4482162)
chr6 (33-207)||(4489041-4489215)
chr6 (33-207)||(4503137-4503311)
chr6 (50-288)||(3173030-3173270)
chr6 (44-168)||(4471066-4471190)
chr6 (50-197)||(4623427-4623574)
chr6 (74-187)||(4462340-4462453)
chr6 (44-209)||(4627258-4627423)
chr6 (44-168)||(4259031-4259155)
chr6 (44-168)||(4265912-4266036)
chr6 (44-210)||(4298353-4298519)
chr6 (105-188)||(4255555-4255638)
chr6 (50-122)||(4581209-4581281)
[»] scaffold0477 (1 HSPs)
scaffold0477 (49-209)||(3382-3542)
[»] scaffold0288 (1 HSPs)
scaffold0288 (51-199)||(2316-2464)
[»] chr5 (1 HSPs)
chr5 (44-168)||(24104240-24104368)
[»] scaffold0475 (1 HSPs)
scaffold0475 (51-137)||(2001-2087)
[»] chr7 (1 HSPs)
chr7 (72-139)||(3087923-3087990)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 4561959 - 4561692
Alignment:
Q  20 aatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtct 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  4561959 aatcataacgaactttcaccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttct 4561860  T
Q  120 gattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttggcttgtttgc 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4561859 gattgctacatgccatttacagtagctgctgctgaagaacatgcactcccagttgttcttttttccccaagtagagcatgttatttcttggcttgtttgc 4561760  T
Q  220 tcagtcctaaaacgtatcagaatagtcaactaccatttaaaggtaatcatttgtgttccctttttctt 287  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  4561759 tcagtcctaaaatgtatcagaatagtcaactaccattcaaaggtaatcatttctgttccctttttctt 4561692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 4575752 - 4575483
Alignment:
Q  20 aatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  4575752 aatcataacgaactttcgccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttct 4575653  T
Q  120 gattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttggcttgtttgc 219  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  4575652 gattgctacatgccatttacagtagatgctgctgaagaacatgccctcccaattgttcttttttccccatgtagtgcatgttatttcttgtcttgtttgc 4575553  T
Q  220 tcagtcctaaaacgtatcagaatagtcaactaccatttaaaggtaatcatttgtgttccctttttcttct 289  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  4575552 tcagtcctaaaatgtatctgaatagtcaagtaccattcaaaggtaatcatttttgttccctttttcttct 4575483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 4482162 - 4481995
Alignment:
Q  20 aatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtct 119  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||||  |||||||||||||||||||||||| |||    
T  4482162 aatcatgacgaactttcgccacttctttgatgaatttctggctaaacttcatgaatctgccactgctggtattatccccccagtcacttgcttagtttct 4482063  T
Q  120 gattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttcccc 187  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||| | ||||||| ||||||||    
T  4482062 gattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaattgttctcttttcccc 4481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 4489041 - 4489215
Alignment:
Q  33 tttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgc 132  Q
    |||| ||| ||||||| || | |||||||||||| | | |||||||| |||||||||| |||||| ||||| ||||||||||| ||||||||  | |||     
T  4489041 tttcaccaattctttggtgtatttcttgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttctgattgcaatatgg 4489140  T
Q  133 catttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttct 207  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||||||| ||| ||||    
T  4489141 catttacagtagatgctgctgaagaacatgcactcccaattgttctcttttccccatgtagtgcatcttacttct 4489215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 4503137 - 4503311
Alignment:
Q  33 tttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgc 132  Q
    |||| ||| ||||||| |||| |||||| ||||| | | ||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||  ||||||    
T  4503137 tttcaccaattctttggtgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgc 4503236  T
Q  133 catttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttct 207  Q
    ||||| |||||  |||||||||||||||| |||||| | |||||||  |||||||| ||||||||| ||| ||||    
T  4503237 catttccagtatatgctgctgaagaacatacactcccaattgttctcgtttccccatgtagtgcatcttacttct 4503311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 288
Target Start/End: Complemental strand, 3173270 - 3173030
Alignment:
Q  50 tgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgct 149  Q
    ||||||| ||||||||| ||| || ||||| |||||||||| ||| || ||||| |||||||| || || ||||| || |||||||||||||||| || |    
T  3173270 tgaactttttgctaaacttcacgattctgcaactgctggtcttatacctccagttacttgctttgtttccgattgctatatgccatttacagtagatgtt 3173171  T
Q  150 gctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttggcttgtttgctcagtcctaaaacgtatcagaatagtcaac 249  Q
    |||||||||||||| |||| | ||||||| ||||| ||  ||||||||||||  ||||||||| |||| |  | |||||||  || ||||||| ||| ||    
T  3173170 gctgaagaacatgctctcccaattgttctattttcgccgtgtagtgcatgtttcttcttggctggttttcatattcctaaattgtttcagaatggtctac 3173071  T
Q  250 taccatttaaaggta--atcatttgtgttccctttttcttc 288  Q
    ||||| | |||||||  ||||||| |  |||||||||||||    
T  3173070 taccactcaaaggtaatatcatttataatccctttttcttc 3173030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 4471190 - 4471066
Alignment:
Q  44 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 143  Q
    ||||| |||||||||| ||| || | | | ||||||||||||||||| |||||| ||||| |||||| || | |||||||||||||||||||||||||||    
T  4471190 ctttggtgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagta 4471091  T
Q  144 gctgctgctgaagaacatgcactcc 168  Q
    | |||||||||||||| ||||||||    
T  4471090 gatgctgctgaagaacgtgcactcc 4471066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 4623574 - 4623427
Alignment:
Q  50 tgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgct 149  Q
    |||||||||||| |||| ||| ||||||||||||||||||| | | || ||||| ||||||||||| || |||||||||||| |||||||| ||   |||    
T  4623574 tgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagct 4623475  T
Q  150 gctgaagaacatgcactcctagttgttcttttttccccaagtagtgca 197  Q
    |||||||| |||||||||| | ||||| | || ||||||  |||||||    
T  4623474 gctgaagagcatgcactcccaattgttttcttctccccagctagtgca 4623427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 4462453 - 4462340
Alignment:
Q  74 ctctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagtt 173  Q
    |||||||||||| | || |||||| || || |||||| |||| |||||||||||||||||||||||||| | ||| |||||| ||| |||||||| | |     
T  4462453 ctctgccactgccgatcttatccctccggttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatc 4462354  T
Q  174 gttcttttttcccc 187  Q
    ||||| ||||||||    
T  4462353 gttctcttttcccc 4462340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 4627423 - 4627258
Alignment:
Q  44 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 143  Q
    ||||| ||||||||||||||||| ||| ||||| ||||||||||||| | |  | ||||| ||||||||||| || |||||||  ||| |||||||  ||    
T  4627423 ctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccata 4627324  T
Q  144 gctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttg 209  Q
       |||||||||||||||||||||| | ||| ||| |||||  |   ||||||||||| |||||||    
T  4627323 caagctgctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttctttcttg 4627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 4259031 - 4259155
Alignment:
Q  44 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 143  Q
    ||||| ||||||||||||||||| ||||||||| |||||| |||||  | | || || || ||||||||||| ||||||||||||||| ||||||   ||    
T  4259031 ctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtata 4259130  T
Q  144 gctgctgctgaagaacatgcactcc 168  Q
       ||||||||||| ||||||||||    
T  4259131 caagctgctgaagagcatgcactcc 4259155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 4265912 - 4266036
Alignment:
Q  44 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 143  Q
    |||||||||||||||| ||| || |||  | ||||||| || ||||  ||| || ||| | |||||||| || || |||||||||||||| |||||| ||    
T  4265912 ctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaata 4266011  T
Q  144 gctgctgctgaagaacatgcactcc 168  Q
    | |||||| ||||||||||||||||    
T  4266012 gatgctgcggaagaacatgcactcc 4266036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 4298353 - 4298519
Alignment:
Q  44 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 143  Q
    ||||| ||||||||||||||||| ||  || |||||||||||||||| | | || ||||| |||||||||||  |||||| ||  ||| |||||||  ||    
T  4298353 ctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttaccata 4298452  T
Q  144 gctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttgg 210  Q
       ||||| |||||||||||||||| | || |||| ||||  |||  |||||||||||  |||||||    
T  4298453 caagctgcggaagaacatgcactcccaattattctcttttgtccagctagtgcatgttccttcttgg 4298519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 4255555 - 4255638
Alignment:
Q  105 acttgcttagtgtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttcccca 188  Q
    ||||||||||| ||||||||||||||| |||||||  ||   ||||||||||| |||||||||| | |||||||  ||||||||    
T  4255555 acttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctttcccca 4255638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 4581281 - 4581209
Alignment:
Q  50 tgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgat 122  Q
    |||||||||||||| || | | |||||||||||| |||||| | |||| ||||| |||||| |||| ||||||    
T  4581281 tgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat 4581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 3382 - 3542
Alignment:
Q  49 atgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgc 148  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| | | || | ||| |||||| ||||  ||||||||||||||||||||||  ||   ||    
T  3382 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagc 3481  T
Q  149 tgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttg 209  Q
    |||||||||||||||||||| | ||||||| |||||| |  | |||||||||| |||||||    
T  3482 tgctgaagaacatgcactcccaattgttctcttttccaccggcagtgcatgttctttcttg 3542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 2316 - 2464
Alignment:
Q  51 gaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgctg 150  Q
    ||||||||||||| || | | || ||||||| | |||||| |||||| ||||| ||| ||||||| ||||||||||||||| |||||||  ||   ||||    
T  2316 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctg 2415  T
Q  151 ctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatg 199  Q
    |||||||| ||||||||| | |  |||||| ||| ||| ||||||||||    
T  2416 ctgaagaatatgcactcccaatccttctttattcgccaggtagtgcatg 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 24104368 - 24104240
Alignment:
Q  44 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacag-- 141  Q
    |||||||||||||||| ||| || |||  | ||||||| || ||||  ||| || ||| | ||||||||||| || ||||||||||||||||||||||      
T  24104368 ctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagtt 24104269  T
Q  142 --tagctgctgctgaagaacatgcactcc 168  Q
      | | ||||| |||||||||||||||||    
T  24104268 gatcgatgctgttgaagaacatgcactcc 24104240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 2087 - 2001
Alignment:
Q  51 gaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccattt 137  Q
    ||||||||||||| || | | || ||||||| | |||||| |||||| ||||| ||| ||||||| ||||||||||||||| |||||    
T  2087 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcattt 2001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 3087990 - 3087923
Alignment:
Q  72 gactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttac 139  Q
    |||||||||  |||||||| ||| || ||||| |||||||||||  |||||| |||||||||||||||    
T  3087990 gactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttac 3087923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University