View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_30 (Length: 227)
Name: NF18232_high_30
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4721123 - 4720916
Alignment:
| Q |
1 |
aatcgctgcctctatctctaggaacattgtttttattaaaaaggatatgattgccaaatcttcatctttgctgttcaacctgcaattgacgtatacatca |
100 |
Q |
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| T |
4721123 |
aatcgctgcctctatctctaggaacattgtttttattaaaaaggatatgattgccaaatcttcatctttgctgttcaacctgcaattgacgtatacatca |
4721024 |
T |
|
| Q |
101 |
agagcaagcatgcgcagtttggtttagtgcacttactaattaactatagaaactatacacatggaagaatataagattgatcaaaacttctccaataatg |
200 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4721023 |
agagcaagcatgcgcaggtgggtttagtgcacttactaattaactatagaaactatacacatggaagaatataggattgatcaaaacttctccaataatg |
4720924 |
T |
|
| Q |
201 |
gaccctac |
208 |
Q |
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|||||||| |
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| T |
4720923 |
gaccctac |
4720916 |
T |
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