View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_5 (Length: 490)
Name: NF18232_high_5
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 3702069 - 3702530
Alignment:
| Q |
18 |
ctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaagatgagttgtgtgagcaacaatatgagaggttcaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3702069 |
ctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaaggtacaaaagatgagttgtgcgagcaacaatatgagaggttcaaac |
3702168 |
T |
|
| Q |
118 |
agttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatt |
217 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702169 |
agttggtggtagaagccaagacactgcttggaaaggcatgtcaagatttaggagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatt |
3702268 |
T |
|
| Q |
218 |
tgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttcc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3702269 |
tgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtggcaaaattcttactgttcc |
3702368 |
T |
|
| Q |
318 |
agcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702369 |
agcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
3702468 |
T |
|
| Q |
418 |
aaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
479 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3702469 |
aaacagccctttgaccatgttacgacggttgacatttttcctttttacgagcatgtagaatt |
3702530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 300 - 479
Target Start/End: Original strand, 3717062 - 3717240
Alignment:
| Q |
300 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccg-ctactaccttgcatttggatgatatgga |
398 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| || | | ||||||||||| |||||||||||||| |
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|
| T |
3717062 |
caaaattcttattgttccagcaaattgcaggaagagctggtag--gagtatgcctttatcctgatgaactggccactaccttgcagttggatgatatgga |
3717159 |
T |
|
| Q |
399 |
ttatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
479 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| |
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| T |
3717160 |
ttatttgatcgagtgtttgaaacagccctttgaccacgttacgagggttggcattttccctttttacgagcaagtagaatt |
3717240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 3713494 - 3713693
Alignment:
| Q |
18 |
ctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaagatgagttgtgtgagc---aacaatatgagaggttca |
114 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||| |||| ||| ||||||||| |||| |
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|
| T |
3713494 |
ctacatttatgcggtgatcctagtgttttgcatattgtttgaaagatatataaagatacagaagatgagttgtgcgagcaaaaactatatgagagattca |
3713593 |
T |
|
| Q |
115 |
aacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaa |
214 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||| | |||| ||||| | ||||||||||||||||| |||||| ||||| ||||||||||||| |
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|
| T |
3713594 |
aacagttggtggttgaagcaaagaccctgcttggaaatgtatgttaagatacaggagatgagttgtgtgag-caacattatgaga--tttgccaccagaa |
3713690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 323 - 479
Target Start/End: Original strand, 3705689 - 3705854
Alignment:
| Q |
323 |
attgcaggaagagctggtagaagaggatgcctttatcccgatggacc-gctactaccttgcatttggat-------gatatggattatttgatcaagtgt |
414 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
3705689 |
attgcaggaagatctgatagaagaggatgcctttatcctgatggacttgctactaccttgcatttggattttggatgatatggattatttgatcgtgtgt |
3705788 |
T |
|
| Q |
415 |
ttgaaacaa-ccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
479 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |
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|
| T |
3705789 |
ttggaacaagccctttgaccacgttacgagggttggcatttttcttttttacgagcaagtagaatt |
3705854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 3719954 - 3720018
Alignment:
| Q |
18 |
ctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaaga |
82 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
3719954 |
ctacatttatgcggtgatcctaatgttttgcatattgttcaaaagacatatcaagatacagaaga |
3720018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 470
Target Start/End: Original strand, 3708327 - 3708561
Alignment:
| Q |
244 |
ctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattct-----tactgtt----ccagcaaattgcaggaaga |
334 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| | | || | ||||| ||||| |
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|
| T |
3708327 |
ctgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaaaattcttcgtgtactggtgtcacaagttatttgcaagaaga |
3708426 |
T |
|
| Q |
335 |
gctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgacc |
433 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||| | | || ||||||||||| |||||| || ||| ||||| |||||||||||| | ||||||| | |
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|
| T |
3708427 |
gccggttgaagaggatgcctttatctcgatggactcaccacaaccttgcatttagatgatttgatttacttgatagagtgtttgaaacca-cctttgatc |
3708525 |
T |
|
| Q |
434 |
atgttacgagggttgacatttttcctttttacgagca |
470 |
Q |
| |
|
||| ||| | ||||| | |||||||||||| ||||| |
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|
| T |
3708526 |
atgctactaaggttggc-cttttcctttttatgagca |
3708561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 3713740 - 3713791
Alignment:
| Q |
300 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
3713740 |
caaaattcttactgttccagcaaattgcaggaagtgctggtggaagaggatg |
3713791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 3716900 - 3717013
Alignment:
| Q |
102 |
tatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgag----taaacattgtga |
197 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| | || |||||||||||||| | |||||| ||| |
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|
| T |
3716900 |
tatgagaggttcaaacagttggtggttgaatccaagaccctgc----aaaggtatgtcaagatacaagaaatgagttgtgtgagcaaattaacattatga |
3716995 |
T |
|
| Q |
198 |
gaactttgccaccagaaa |
215 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
3716996 |
gagctttgccaccagaaa |
3717013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 233 - 479
Target Start/End: Complemental strand, 3520411 - 3520150
Alignment:
| Q |
233 |
tggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagc------------ |
320 |
Q |
| |
|
|||||| |||||| ||||| ||||||| |||||||||||| | || |||||| |||||||| ||| |||||||||| |||||||||| |
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|
| T |
3520411 |
tggggatgggccttaaccttaacattcgaagggtgatttttaataacctttcaaagtacaacggtgacaaaattcttcctgttccagcgtcacaggttaa |
3520312 |
T |
|
| Q |
321 |
--aaattgcaggaagagctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
417 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||||| |||||| |||||||| |
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|
| T |
3520311 |
gcaaattgccggaagagctggtcgaagaggatgtgtttatcccgatggactcgccactactttgcatttagaggatttggattacttgatcgagtgtttg |
3520212 |
T |
|
| Q |
418 |
aaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaatt |
479 |
Q |
| |
|
|||||||||||||| ||||| || ||||| | ||||||||| ||| ||||| || ||||| |
|
|
| T |
3520211 |
aaacaaccctttgatcatgtggagaaggttggcctttttccttattatgagcaggttgaatt |
3520150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 3520747 - 3520615
Alignment:
| Q |
19 |
tacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaagatgagttgtgtgagcaacaatatgagaggttcaaaca |
118 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||||||||||||| | ||| || ||| |||||| |||| ||||||||| |||||||||||||||| |
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|
| T |
3520747 |
tacatttatgcggtgatcctagtgttttggatattgttcgaaagatctgtcaggaaacaggagatgatttgtatgagcaacattatgagaggttcaaacc |
3520648 |
T |
|
| Q |
119 |
gttggtggtagaagccaagaccctgcttggaaa |
151 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| |
|
|
| T |
3520647 |
gttggtagtcgaagcaaagaccctgcttggaaa |
3520615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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