View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_high_9 (Length: 432)
Name: NF18232_high_9
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 26034174 - 26033763
Alignment:
| Q |
7 |
tttcataactaaactaatcgcgtttaccctataaattgcagggagaccagttgatagttggaaatttgggcgattctcgtgcagttctttgcacaaggga |
106 |
Q |
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| T |
26034174 |
tttcataattaaactaatcgtgtttaccctataaattgcagggagaccagttgatagttggaaatttgggcgattctcgtgcagttctttgcacaaggga |
26034075 |
T |
|
| Q |
107 |
tagagatcaacttattgctgttcaacttaccgttgatttgaaaccggatattccaagtaagtattggtatatcaatattgacatcaattctcaaggtatt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26034074 |
tagagatcaacttattgctgttcaacttaccgttgatttgaaaccggatattccaagtaagtattggtatatcgatattgacatcaattctcaaggtatt |
26033975 |
T |
|
| Q |
207 |
atacaagcctatcaaatctaatcgcaattttatcaatgtttcaggtgaagcttcaagaatctgtagctgtgaaggaagggttttcgcagcggaagaagaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033974 |
atacaagcctatcaaatctaatcgcaattttatcaatgtttcaggtgaagcttcaagaatctgtagctgtgaaggaagggttttcgcagcggaagaagaa |
26033875 |
T |
|
| Q |
307 |
ccggatgtgtacagaatatggatgcctgatgatgactgtcctggattagctatgtcaagagcctttggagacttttgtctaaaagattatggccttattg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033874 |
ccggatgtgtacagaatatggatgcctgatgatgactgtcctggattagctatgtcaagagcctttggagacttttgtctaaaagattatggccttattg |
26033775 |
T |
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| Q |
407 |
caactcctgatg |
418 |
Q |
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||||||| |||| |
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| T |
26033774 |
caactccagatg |
26033763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 3705998 - 3706122
Alignment:
| Q |
274 |
tgtgaaggaagggttttcgcagcggaagaagaaccggatgtgtacagaatatggatgcctgatgatgactgtcctggattagctatgtcaagagcctttg |
373 |
Q |
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|||| |||||| ||||| ||||| ||||||| || ||||| | ||||| |||||| |||| | ||| |||||||||||||||||||||||||| |||| |
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| T |
3705998 |
tgtggaggaagagtttttgcagcaaaagaagatcctgatgtaaaaagaatttggatggctgaaggtgattgtcctggattagctatgtcaagagcatttg |
3706097 |
T |
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| Q |
374 |
gagacttttgtctaaaagattatgg |
398 |
Q |
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|||| ||||| || ||||| ||||| |
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| T |
3706098 |
gagatttttgccttaaagaatatgg |
3706122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 3705588 - 3705651
Alignment:
| Q |
39 |
aaattgcagggagaccagttgatagttggaaatttgggcgattctcgtgcagttctttgcacaa |
102 |
Q |
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||||| ||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||||||| |
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| T |
3705588 |
aaattccagggtgaccaattgataattggcaatttgggcgattctcgtgcagtactttgcacaa |
3705651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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