View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18232_low_13 (Length: 382)
Name: NF18232_low_13
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 33769404 - 33769769
Alignment:
| Q |
1 |
atcagcgttatgtcattgcaaatcctggcgattttgttttgtatgtgattgggaaattttgaatacaatcatagttcgaatgagaagaggagaattggaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33769404 |
atcagcattatgtcattgcaaatcctggcgattttgttttgtatgtgattgggaaattttgaatacaatcatagttcgaatgagaagaggagaattggaa |
33769503 |
T |
|
| Q |
101 |
ccaaatgaatctcattattcccatatatacatatatcaggaatcatgttgtaaaaccagaactatatgtgaagtaaatacatcataagttagtaatgagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33769504 |
ccaaatgaatctcattattcccatatatacatatatcaggaatcatgttgtaaaaccagaactatatgtgaagtaaatacatcataagttagtaaggagt |
33769603 |
T |
|
| Q |
201 |
acaaaaatagattctattatggttgtttccttttcctactggtattagacgcaatatctgatcatgcatgatatgtatgtgaagtaagcacatgacagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33769604 |
acaaaaatagattctattatggttgtttccttttcctactggtattagacgcaatatctgatcatgcatgatatatatgtgaagtaagcacatgacagat |
33769703 |
T |
|
| Q |
301 |
tatgatccaaataatctattatgaccatcgtccttatatagtataataccaattcaccaaattgtt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33769704 |
tatgatccaaataatctattatgaccatcgtccttatatagtataataccaattcaccaaattgtt |
33769769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University