View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18232_low_17 (Length: 335)

Name: NF18232_low_17
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18232_low_17
NF18232_low_17
[»] chr3 (12 HSPs)
chr3 (1-317)||(48840504-48840819)
chr3 (4-159)||(50909995-50910151)
chr3 (16-252)||(50904652-50904885)
chr3 (4-263)||(38043938-38044192)
chr3 (4-187)||(38028687-38028871)
chr3 (16-187)||(55084833-55085005)
chr3 (5-187)||(38036714-38036897)
chr3 (4-187)||(38040002-38040186)
chr3 (4-132)||(50911845-50911974)
chr3 (4-187)||(38033696-38033884)
chr3 (4-159)||(38024824-38024980)
chr3 (4-159)||(38031276-38031432)
[»] chr8 (4 HSPs)
chr8 (4-187)||(21604675-21604859)
chr8 (4-159)||(21607245-21607401)
chr8 (34-126)||(21634608-21634701)
chr8 (107-187)||(21609725-21609805)
[»] chr4 (55 HSPs)
chr4 (57-156)||(17970388-17970487)
chr4 (14-118)||(27503967-27504072)
chr4 (4-118)||(27415656-27415771)
chr4 (14-118)||(27468317-27468422)
chr4 (14-118)||(27514936-27515041)
chr4 (14-124)||(27431132-27431243)
chr4 (14-124)||(27526096-27526207)
chr4 (14-118)||(27412709-27412814)
chr4 (14-118)||(27420453-27420558)
chr4 (14-118)||(27425857-27425962)
chr4 (14-118)||(27475569-27475674)
chr4 (14-118)||(27524569-27524674)
chr4 (60-124)||(27559224-27559288)
chr4 (60-124)||(27567347-27567411)
chr4 (57-124)||(27444778-27444845)
chr4 (57-124)||(27466910-27466977)
chr4 (60-107)||(27571715-27571762)
chr4 (4-124)||(27557524-27557645)
chr4 (60-117)||(27563337-27563394)
chr4 (60-117)||(27585780-27585837)
chr4 (60-108)||(27411456-27411504)
chr4 (60-124)||(27419055-27419119)
chr4 (57-125)||(27460567-27460635)
chr4 (57-124)||(27473981-27474048)
chr4 (57-124)||(27479990-27480057)
chr4 (14-124)||(27505686-27505797)
chr4 (57-124)||(27554398-27554465)
chr4 (54-117)||(27600639-27600702)
chr4 (60-118)||(27506790-27506848)
chr4 (31-116)||(27570041-27570127)
chr4 (60-117)||(27414295-27414352)
chr4 (14-122)||(27423267-27423376)
chr4 (57-125)||(27476776-27476844)
chr4 (60-124)||(27507797-27507861)
chr4 (60-124)||(27556363-27556427)
chr4 (57-124)||(27502119-27502186)
chr4 (57-124)||(27516593-27516660)
chr4 (60-118)||(27478873-27478931)
chr4 (60-114)||(27485937-27485991)
chr4 (31-104)||(27490022-27490096)
chr4 (60-121)||(27495628-27495689)
chr4 (14-118)||(27508897-27509002)
chr4 (71-124)||(27513760-27513813)
chr4 (64-124)||(27487079-27487139)
chr4 (31-106)||(27502809-27502885)
chr4 (57-124)||(27523387-27523454)
chr4 (57-107)||(27498504-27498554)
chr4 (68-108)||(27421931-27421971)
chr4 (60-108)||(27424514-27424562)
chr4 (60-124)||(27446239-27446303)
chr4 (64-124)||(27469556-27469616)
chr4 (57-115)||(27501406-27501464)
chr4 (68-106)||(27565953-27565991)
chr4 (57-118)||(27497312-27497373)
chr4 (60-116)||(27577410-27577466)
[»] chr2 (1 HSPs)
chr2 (57-156)||(3073658-3073757)
[»] chr5 (4 HSPs)
chr5 (14-117)||(1756748-1756852)
chr5 (59-118)||(1754779-1754838)
chr5 (57-124)||(1759341-1759408)
chr5 (57-106)||(1754243-1754292)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 48840819 - 48840504
Alignment:
Q  1 gtaatccccatgccatacttgaaccaagactcatttcaagacttgttgagtaagtggaggaagaatttggatatgatcatccaatgggtggtctcacaat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  48840819 gtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagtaagtggagaaagaatttggatatgatcatccaatgggtggcctcacaat 48840720  T
Q  101 tccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattagtagtgatattttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48840719 tccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattagtagtgatattttc 48840620  T
Q  201 tacaacaggcatattttattattttacacttgtaaatatttttccttttccctttatcgggaatgggtgaaacatgtccatctgaatgacatactacgta 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48840619 tacaacaggcatattttattattttacacttgtaaata-ttttccttttccctttatcgggaatgggtgaaacatgtccatctgaatgacatactacgta 48840521  T
Q  301 acaagttattttcctct 317  Q
    |||||||||||||||||    
T  48840520 acaagttattttcctct 48840504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 50909995 - 50910151
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||||| |||||||||||||||  ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50909995 atccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattc 50910094  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatct 159  Q
    |||||||||||||||| |||||||| ||||||  | ||||||||| |||||||||||    
T  50910095 cttgcacagaagatgtcttcttgcaaattacttctcgcttcaatgagctataaatct 50910151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 50904885 - 50904652
Alignment:
Q  16 tacttgaaccaagactcatttcaagacttgttgagta-agtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaag 114  Q
    ||||||||||||   |||||||||||||||||||||  ||  ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| |||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaag 50904786  T
Q  115 atgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattagtagtgatattttctacaacaggcatat 214  Q
    | ||||| ||||| || |||  | ||||||||||||| |||||||  | ||| |||| | ||||||||||||||||||| |||||  |||| |||| | |    
T  50904785 aggtttttttgcatatcacttctcgcttcaatgggctgtaaatctgcagctgcaagagagtgacatagattagtagtgacattttgaacaataggcgttt 50904686  T
Q  215 tttattattttacacttgtaaatatttttccttttccc 252  Q
    |||    |||||||||||||||||||||||||||||||    
T  50904685 ttt----ttttacacttgtaaatatttttccttttccc 50904652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 38043938 - 38044192
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||| ||| |||||||||| |||   || |||||||||||| ||||| |||  |||||||||||||||||||||||||||||||| || ||||||||||    
T  38043938 atccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattc 38044037  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattagtagtgatattttcta 202  Q
    ||||||| |||| |||||||||||   |||||  | ||||||||||| |||| | ||  | ||| || | |||||||||||||||| |||| |||||  |    
T  38044038 cttgcaccgaaggtgttttcttgcgtgttacttctcgcttcaatgggatatagagctgcagctgcaaaagactgacatagattagtcgtgacattttgaa 38044137  T
Q  203 caacaggcatattttattattttacacttgtaaatatttttccttttccctttatcgggaa 263  Q
    ||| ||||||      || |||||||||||||||||||||||||||||||||||| |||||    
T  38044138 caataggcat------tttttttacacttgtaaatatttttccttttccctttattgggaa 38044192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 38028871 - 38028687
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||| | |||||||||||||||  ||||||||| || |||||||| |||  |||||||||||||||||||| ||||||||||| || ||||||||||    
T  38028871 atccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattc 38028772  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    ||||||||||||| ||||||||||| ||||||  |  |||||||||||||||||||| | |||  | || |||||||||||||||    
T  38028771 cttgcacagaagacgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacatagattag 38028687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 55084833 - 55085005
Alignment:
Q  16 tacttgaaccaagactcatttcaagacttgttgagtaagt-ggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaag 114  Q
    ||||||||||||   |||||||||||||||||||||  |  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  55084833 tacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaag 55084932  T
Q  115 atgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    |||||||||| || ||||||  | |||||||||  |||||||||| | |||| |||| | |||||||||||||    
T  55084933 atgttttctttcatattacttctcgcttcaatgaactataaatcttacactgaaagagattgacatagattag 55085005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 38036897 - 38036714
Alignment:
Q  5 tccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattcc 103  Q
    ||||||||||||||||||||||||  ||||||||| | ||||||||| |||  ||||||||||| |||||||| ||||||||||| || |||||||||||    
T  38036897 tccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattcc 38036798  T
Q  104 ttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    |||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||| | |||  | || |||||||||||||||    
T  38036797 ttgcacagaatacgttttcttgcatattacttctcacttcaatgggctataaatcttacactataggagactgacatagattag 38036714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 38040186 - 38040002
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||| | |||||||||||||||  ||||||||| || |||||||| |||  ||||||||||| |||||||| ||||||||||| || ||||||||||    
T  38040186 atccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattc 38040087  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    ||||||||||||| ||||||||||| ||||||  |  |||||||||||||||||||| | |||  | || |||||||||||||||    
T  38040086 cttgcacagaagacgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacatagattag 38040002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 50911974 - 50911845
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||| | |||||||||||||||  ||||||||| ||||||||||| |||  ||||||||||||||||||||||| ||||||||||| || |||||||    
T  50911974 atccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattc 50911875  T
Q  103 cttgcacagaagatgttttcttgcacatta 132  Q
    |||||||||||| |||||||||||||||||    
T  50911874 cttgcacagaaggtgttttcttgcacatta 50911845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 38033884 - 38033696
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaat----gggtggtctcaca 98  Q
    ||||||| | |||||||||||||||  ||||||||| ||||||||||| |||  |||||||||||||||||||| ||||||||    ||| ||  |||||    
T  38033884 atccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaattaatgggcggcatcaca 38033785  T
Q  99 attccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    ||||| ||||||||||||||||||||||| ||||||  | ||||||||||||||||||||| | |||  | || |||||||||||||||    
T  38033784 attccctgcacagaagatgttttcttgcatattacttctcgcttcaatgggctataaatcttacactaaaggagactgacatagattag 38033696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 38024980 - 38024824
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||||| |||||||||||||||  || |||||| |||| |||||| |||  ||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  38024980 atccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattc 38024881  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatct 159  Q
    |||||||||||||  ||||| || | ||||||  | |||||||||||||||||||||    
T  38024880 cttgcacagaagacattttcatggaaattacttctcgcttcaatgggctataaatct 38024824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 38031432 - 38031276
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||||| |||||||||||||||  || |||||| |||| |||||| |||  ||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  38031432 atccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattc 38031333  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatct 159  Q
    |||||||||||||  ||||| || | ||||||  | |||||||||||||||||||||    
T  38031332 cttgcacagaagacattttcatggaaattacttctcgcttcaatgggctataaatct 38031276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 21604859 - 21604675
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||| | |||||||||||||||  ||||||||| || |||||||| |||  ||||||||||| |||||||| ||||||||||| || ||||||||||    
T  21604859 atccccacgtcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattc 21604760  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    ||||||||||||| ||||||||||| ||||||  |  |||||||||||||||||||| | |||  | || |||||||||||||||    
T  21604759 cttgcacagaagacgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacatagattag 21604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 21607401 - 21607245
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||||| |||||||||||| ||  || |||||| |||| |||||| |||  ||||||||||||||||||||||| ||||||||||| |||||  |||    
T  21607401 atccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttc 21607302  T
Q  103 cttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatct 159  Q
    |||||||||||||| ||||| || | ||||||  | |||||||||||||||||||||    
T  21607301 cttgcacagaagatattttcatggaaattacttctcgcttcaatgggctataaatct 21607245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 21634608 - 21634701
Alignment:
Q  34 tttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttcttgc 126  Q
    |||||||||||| ||||| |||  ||||||||||||||||||||||||| |||||| ||  |||||||||||||||| ||||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttcttgc 21634701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 21609805 - 21609725
Alignment:
Q  107 cacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacatagattag 187  Q
    |||||||||  |||||||||| ||||||  |  |||||||||||||||||||| | |||  | || |||||||||||||||    
T  21609805 cacagaagacattttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacatagattag 21609725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 17970388 - 17970487
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaa 156  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||  |||||  |||||||||||| |||||||    
T  17970388 gaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttttttgcatgttacttctagcttcaatggtctataaa 17970487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27503967 - 27504072
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||   ||||||||||||||||||||| |||  |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||    
T  27503967 catacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcaccga 27504066  T
Q  113 agatgt 118  Q
    ||||||    
T  27504067 agatgt 27504072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 27415656 - 27415771
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||||||  ||||||||||||||   || |||||||||||||||||| |||  |||||||| ||||||||||||||| | |||||||| ||||| ||||    
T  27415656 atccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccattc 27415755  T
Q  103 cttgcacagaagatgt 118  Q
    ||||||||||||||||    
T  27415756 cttgcacagaagatgt 27415771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 27468422 - 27468317
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagtaagtg-gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||| ||||||   ||||||||||||||||||||| | |  |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||    
T  27468422 catacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcacgga 27468323  T
Q  113 agatgt 118  Q
    ||||||    
T  27468322 agatgt 27468317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27514936 - 27515041
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagtaagtg-gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    |||||||||| |||   ||||||||||||||||||||| | |  |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  27514936 catacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacaga 27515035  T
Q  113 agatgt 118  Q
    ||||||    
T  27515036 agatgt 27515041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 27431243 - 27431132
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||   ||||||||||| ||||||| | |||  |||||| ||||||||||||| |||||||  |||||||||||||||||||||| |||    
T  27431243 catacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagaga 27431144  T
Q  113 agatgttttctt 124  Q
    ||| ||||||||    
T  27431143 agacgttttctt 27431132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 27526207 - 27526096
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||  |||||| ||||| ||||||||  |||  |||||| |||||| |||||||||||||| |||||||||||| |||||||||| |||    
T  27526207 catacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagaga 27526108  T
Q  113 agatgttttctt 124  Q
    ||| ||||||||    
T  27526107 agacgttttctt 27526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27412709 - 27412814
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||   | |||||||||||| |||||| |||  || ||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||    
T  27412709 catacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcaccattccttgcacgga 27412808  T
Q  113 agatgt 118  Q
    ||||||    
T  27412809 agatgt 27412814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27420453 - 27420558
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||| ||||   |||||||||| |||| ||||| |||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||    
T  27420453 catacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcacgga 27420552  T
Q  113 agatgt 118  Q
    ||||||    
T  27420553 agatgt 27420558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27425857 - 27425962
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||   |||||||||||||| |||||| || | |||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||    
T  27425857 catacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcaccga 27425956  T
Q  113 agatgt 118  Q
     |||||    
T  27425957 ggatgt 27425962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 27475674 - 27475569
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    |||||||||| |||   ||||||||||||||||||||| |||  |||||||| ||||||||||||||||| |||||||| ||||| ||||||||| | ||    
T  27475674 catacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctccga 27475575  T
Q  113 agatgt 118  Q
    ||||||    
T  27475574 agatgt 27475569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27524569 - 27524674
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    |||| |||||||||   ||||||||||||||||||| | |||  |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||    
T  27524569 catatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcaccga 27524668  T
Q  113 agatgt 118  Q
    ||||||    
T  27524669 agatgt 27524674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 27559288 - 27559224
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27559288 gaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgctttctt 27559224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 27567347 - 27567411
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27567347 gaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttctt 27567411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 27444845 - 27444778
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  27444845 gaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 27444778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 27466910 - 27466977
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  27466910 gaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttctt 27466977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 27571715 - 27571762
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571715 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 27557524 - 27557645
Alignment:
Q  4 atccccatgccatacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattc 102  Q
    ||||| ||| ||||||| ||||||   ||||||||||| ||| ||| | |||  |||||| |||||| ||||| ||||||||||||||||||||| ||||    
T  27557524 atcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattc 27557623  T
Q  103 cttgcacagaagatgttttctt 124  Q
    | |||| |||||||||||||||    
T  27557624 catgcagagaagatgttttctt 27557645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 27563394 - 27563337
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatg 117  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  27563394 gaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatg 27563337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 27585780 - 27585837
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatg 117  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  27585780 gaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacagaagatg 27585837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 27411504 - 27411456
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgca 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27411504 gaagaatttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 27419119 - 27419055
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||| ||||||    
T  27419119 gaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctt 27419055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 27460567 - 27460635
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttcttg 125  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  27460567 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttg 27460635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 27473981 - 27474048
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  27473981 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttctt 27474048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 27479990 - 27480057
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  27479990 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttctt 27480057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 27505797 - 27505686
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||  |||||| ||||| |||||||   |||  |||||| |||||| |||||| |||||||||||||||||||| |||||||||| |||    
T  27505797 catacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagaga 27505698  T
Q  113 agatgttttctt 124  Q
    |||  |||||||    
T  27505697 agagattttctt 27505686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 27554398 - 27554465
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||| | |||||| ||||||||    
T  27554398 gaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttctt 27554465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 27600639 - 27600702
Alignment:
Q  54 gtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatg 117  Q
    ||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||    
T  27600639 gtggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 27600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 27506790 - 27506848
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgt 118  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  27506790 gaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgt 27506848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 27570127 - 27570041
Alignment:
Q  31 tcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagat 116  Q
    ||||||||||||||| ||||| |||  |||||||| || |||||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  27570127 tcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagat 27570041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 27414352 - 27414295
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatg 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||    
T  27414352 gaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatg 27414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 27423267 - 27423376
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||   ||||||||||| ||||||||| |||  |||||||| ||||| ||  ||||||| |||||||| |||||  |||||||||| ||    
T  27423267 catacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgga 27423366  T
Q  113 agatgttttc 122  Q
    ||||||||||    
T  27423367 agatgttttc 27423376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 27476776 - 27476844
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttcttg 125  Q
    |||||| |||||| |||||||||||||||||||||||| || |||||||||| ||||||  ||||||||    
T  27476776 gaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttg 27476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 27507861 - 27507797
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||   ||||||| |||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttctt 27507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 27556427 - 27556363
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||||||||||||||||||| | |||||||||||||||||||| ||||  ||||||| ||||||    
T  27556427 gaagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatgctttctt 27556363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 27502186 - 27502119
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| |||||||||||||||||||||||| || |||||||||| ||||||  |||||||    
T  27502186 gaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttctt 27502119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 27516660 - 27516593
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| |||||| ||||||||||| |||||||| |||||||||| |||||| ||||||||    
T  27516660 gaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttctt 27516593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 27478931 - 27478873
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgt 118  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||| | ||||||||    
T  27478931 gaagaatttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgt 27478873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 27485991 - 27485937
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaag 114  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  27485991 gaagaatttggatatgatcatcccatgggtggcctcaccattccttgcactgaag 27485937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 27490022 - 27490096
Alignment:
Q  31 tcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattcct 104  Q
    ||||||||||| ||||||| | |||  |||||||| |||||||||||||||||||||||||| ||||| ||||||    
T  27490022 tcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 27495628 - 27495689
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgtttt 121  Q
    ||||| ||||||| | |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  27495628 gaagagtttggatttaatcatccaatgggtggtctcaccattccttgcagagaagatatttt 27495689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 27508897 - 27509002
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagtaagtg-gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    |||| |||||||||   ||||||||||||||||||| | ||   |||||||| ||||||||||||||||||| |||||| ||||| ||||| ||| | ||    
T  27508897 catatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgctccga 27508996  T
Q  113 agatgt 118  Q
    ||||||    
T  27508997 agatgt 27509002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 27513813 - 27513760
Alignment:
Q  71 atatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| || |||||    
T  27513813 atatgatcatccaatgggtggtctcactattccttgcagagaagaagtattctt 27513760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 27487079 - 27487139
Alignment:
Q  64 aatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||||||||||||||||||||| || |||||||||| ||||||  |||||||    
T  27487079 aatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttctt 27487139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 27502885 - 27502809
Alignment:
Q  31 tcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttg 106  Q
    ||||||||||||||| ||||  |||  | |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  27502885 tcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 27523454 - 27523387
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| |||||| ||||||||||||||||| || |||||||||| ||||||  |||||||    
T  27523454 gaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttctt 27523387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 27498504 - 27498554
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 107  Q
    |||||| |||| | ||||||||||||||||||||||||||| |||||||||    
T  27498504 gaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 27421971 - 27421931
Alignment:
Q  68 tggatatgatcatccaatgggtggtctcacaattccttgca 108  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  27421971 tggatacgatcatccaacgggtggtctcacaattccttgca 27421931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 27424562 - 27424514
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgca 108  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| ||||    
T  27424562 gaagaatatggatatgatcatccaatgggtggtcttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 27446239 - 27446303
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    ||||| |||| ||||||||||| ||||| ||||||| | ||||||||||  ||||||||||||||    
T  27446239 gaagagtttgaatatgatcatcgaatggatggtctctcgattccttgcagtgaagatgttttctt 27446303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 27469556 - 27469616
Alignment:
Q  64 aatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| ||||||||||||||||| || |||||||||| ||||||  |||||||    
T  27469556 aatttgaatatgaacatccaatgggtggtctaactattccttgcagagaagaaattttctt 27469616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 27501406 - 27501464
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaaga 115  Q
    |||||| |||||| ||| |||||||||| |||||||||||| |||||||| | ||||||    
T  27501406 gaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaaga 27501464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 27565991 - 27565953
Alignment:
Q  68 tggatatgatcatccaatgggtggtctcacaattccttg 106  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  27565991 tggatatgatcatccaatgggtggcctcaccattccttg 27565953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 27497373 - 27497312
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgt 118  Q
    |||||||| ||||||||||||||||| |  ||||| ||||| ||||||||||| ||| ||||    
T  27497373 gaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgcactgaaaatgt 27497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 27577410 - 27577466
Alignment:
Q  60 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagat 116  Q
    |||||||||||||   |||| || |||||||||||||||||||| ||||| ||||||    
T  27577410 gaagaatttggattcaatcaccctatgggtggtctcacaattccatgcactgaagat 27577466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 3073658 - 3073757
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaa 156  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||  |||||  |||||||||||| |||||||    
T  3073658 gaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttttttgcatgttacttctagcttcaatggtctataaa 3073757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 1756852 - 1756748
Alignment:
Q  14 catacttgaaccaagactcatttcaagacttgttgagt-aagtggaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacaga 112  Q
    ||||||||||||||   || |||||| ||||||||||| |||  || |||||||||||||||||||| || |||||||| ||||| ||||||||||| ||    
T  1756852 catacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgcaccga 1756753  T
Q  113 agatg 117  Q
    |||||    
T  1756752 agatg 1756748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 1754779 - 1754838
Alignment:
Q  59 ggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgt 118  Q
    |||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  1754779 ggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgt 1754838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 1759341 - 1759408
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttgcacagaagatgttttctt 124  Q
    |||||| |||||| |||  | |||||||||||||||||||| |||| ||||| |||||| ||||||||    
T  1759341 gaggaacaatttgaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttctt 1759408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 1754292 - 1754243
Alignment:
Q  57 gaggaagaatttggatatgatcatccaatgggtggtctcacaattccttg 106  Q
    |||||| | |||| |||||||||||| |||||||||||||| ||||||||    
T  1754292 gaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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