View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_18 (Length: 333)
Name: NF18232_low_18
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 1089880 - 1090179
Alignment:
| Q |
17 |
agaacacttggatgacattgtatgtgttctttttcggcttaaccaatggtattgggttcgaattcaaccatggaaatgcatcaatgttaaatctttggag |
116 |
Q |
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| T |
1089880 |
agaacatttggatgatattttaagtgttcttttccggattaaccaatggttttggtttcgaattcaaccatgaaaatgcagcaatgttaaatctttagag |
1089979 |
T |
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| Q |
117 |
atgagagttttgatatctattgcagttctatcatattcgagggattaacctctggaattgcgcgcagaagatacttggatcatnnnnnnncttcaataag |
216 |
Q |
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| T |
1089980 |
aggagagttttaatatctattgtagttctatcatatttgagggattaacctctggaattgcgcgcagaagatacttggatcataaaaaaacttcaataag |
1090079 |
T |
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| Q |
217 |
ctattatgtaattttaaatgttaccagatatagtataaatatataattaacggtgatccaagacaaggattttaaaagatcagctaaattacactcattg |
316 |
Q |
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| T |
1090080 |
ctattatgtaattttaaatgttac-------tgtataaatatataattaacggtgatccaagacaaggattttaaaagatcagctaaattacactcattg |
1090172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 1066990 - 1067289
Alignment:
| Q |
19 |
aacacttggatgacattgtatgtgttctttttcggcttaaccaatggtattgggttcgaattcaaccatggaaatgcatcaatgttaaatctttggagat |
118 |
Q |
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| T |
1066990 |
aacacttggatgacattgtaagtgttcttctccggattaaccaatggtcttgggtttgaattcatccatgaaaatgcagcaatattaaatctctggagag |
1067089 |
T |
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| Q |
119 |
gagagttttgatatctattgcagttctatcatattcgagggattaacctctggaattgcgcgcagaagatacttggatc--atnnnnnnncttcaataag |
216 |
Q |
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| T |
1067090 |
gagagttttaatatcttttgtagttctatcatattcgaaaga-taacctctggaattgctcgcagaagat-----gatcaaaaaaaaaaaattcaacaaa |
1067183 |
T |
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| Q |
217 |
ctattatgtaattttaaatgttaccagatatagtataaatatataattaacggtgatccaagacaaggattttaaaagatcagctaaattacactcattg |
316 |
Q |
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| T |
1067184 |
ctattatataattttaaatgttacgagataaagtataaatatataattaacggtgatccaaaataaggattttaaaagataaactaaattacactcattg |
1067283 |
T |
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