View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_2 (Length: 865)
Name: NF18232_low_2
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 1 - 850
Target Start/End: Original strand, 38867340 - 38868196
Alignment:
| Q |
1 |
ttgagtcactcagttcatatcagtgattattcatgcatcacaatattcaaaattgttggaatatatcaaacaaacaactaataatttctttgatattttg |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867340 |
ttgagtcactcagttcatatcaatgattattcatgcatcacaatattcaaaattgttggaatatatcaaacaaacaactaataatttctttgatattttg |
38867439 |
T |
|
| Q |
101 |
tcctctaaaaaatgtggaatatatcacatttgttctctaaaaattgaataatcacttagaccttgtttcacccgatgaccaatcaaagtttatcatatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867440 |
tcctctaaaaaatgtggaatatatcacatttgttctctaaaaattgaataatcacttagaccttgtttcacccgatgaccaatcaaagtttatcatatcc |
38867539 |
T |
|
| Q |
201 |
ccaaccaccattccaccctttatatcctccccttgtctggttcgaacaaaatcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtctatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38867540 |
ccaaccaccattccaccctttatatcctccccttgtctggttcgaacaaaatcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctatt |
38867639 |
T |
|
| Q |
301 |
-cagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacagtttgagaagttcatgcttcaaaagaatgaaacagcnnnnnnnnnn---- |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||| ||||||||||| |
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| T |
38867640 |
tcagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacaatatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaa |
38867739 |
T |
|
| Q |
396 |
----catcaaataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867740 |
aaaacatcaaataacactcattcaacccctttcaatctagaaatatggagtatcattttacttttcagttttttaattacaattggcaaaaggaaagaat |
38867839 |
T |
|
| Q |
492 |
agcactattgagccactgtgaaaccaacctcatgcagatccctccccgttcagtgaccaggataaccatggcccaactcttctagtgacctcacctgagc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38867840 |
agcactattgagccactgtgaaaccaacctcatgcggatccctcc--gttcagtgaccaggataaccatggccaaactcttctagtgacctcacctgagc |
38867937 |
T |
|
| Q |
592 |
ctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaatcagcaaacaattggctgtg |
691 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
38867938 |
ctacagcccaacctgttaagacaggtccatgttccatcaccttaatgctcccacatgggttacaagttggtgttaatcaatcagctaacaattggctgtg |
38868037 |
T |
|
| Q |
692 |
ttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctcccaagacaattaatgatcttatgttggaaatatgcatg |
791 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38868038 |
ttggaaggacataaaccattgcatattctatgttttaaacgatgtgagacattttattgctcccaagacaattaatggtcttatgttggaaatatgcatg |
38868137 |
T |
|
| Q |
792 |
tcacacatcatatgcaaatttacccactctgatcataactcatgattatacacaataat |
850 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38868138 |
tcacatatcatatgcatatttacccactctgatcataagtcatgattatacacaataat |
38868196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 591 - 808
Target Start/End: Complemental strand, 38807444 - 38807226
Alignment:
| Q |
591 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
689 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| | ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38807444 |
cctacagcccaacctgttaagacacagccatgttccatccctttgttgctcccacatgggtcacaagttggtgttaatcaactcagcaaacaattggctg |
38807345 |
T |
|
| Q |
690 |
tgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctcccaagacaattaatgatcttatgttggaaatatgca |
789 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| |
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|
| T |
38807344 |
tgttggaagcctataaaccattgcattaattatgttttaaacgatgtgggacattttattgctcccaagacagttagtggtcttatgttggaaatatgca |
38807245 |
T |
|
| Q |
790 |
tgtcacacatcatatgcaa |
808 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38807244 |
tgtcacacatcatatgcaa |
38807226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 591 - 753
Target Start/End: Complemental strand, 38750116 - 38749953
Alignment:
| Q |
591 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
689 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
38750116 |
cctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggttacaagttggtgttattcaactcagcaaacaaatggctg |
38750017 |
T |
|
| Q |
690 |
tgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctc |
753 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
38750016 |
tgttggaaggttataaaccatttcatattctatgttctaaacgatgtgggacattttattgctc |
38749953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 621 - 808
Target Start/End: Original strand, 38866004 - 38866193
Alignment:
| Q |
621 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattc |
719 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
38866004 |
tgttccatcaccttggtgctcccacatgggtcacaagttggtgttaatcaactcagcgaacaattggctgtgttggaagtttataaacaattgcatattt |
38866103 |
T |
|
| Q |
720 |
tatgttttaaaagatgtgggacattttattgct-cccaagacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaa |
808 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
38866104 |
tatgttctaaccgatgtgggacattttattgctccccaagacacttggtggtcttatgttggaaatatgcatgtcacaggtcatatgcaa |
38866193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 591 - 753
Target Start/End: Original strand, 39310718 - 39310881
Alignment:
| Q |
591 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
689 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
39310718 |
cctacagcccaacctgttaagacacaatcatgttccatcaccttgttgctcccacatgggttacaagttggtgtaaatcaactcagcgaacaattggctg |
39310817 |
T |
|
| Q |
690 |
tgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctc |
753 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39310818 |
tgttggaagtttataaaccattgcatattctatgttttaaacgatgtgggacattttattgctc |
39310881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 591 - 753
Target Start/End: Original strand, 38848986 - 38849149
Alignment:
| Q |
591 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
689 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
38848986 |
cctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaactcagcaaacaaatccctg |
38849085 |
T |
|
| Q |
690 |
tgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctc |
753 |
Q |
| |
|
||||||||| |||||||| || ||||| || |||| |||| |||||||||||||||||||||| |
|
|
| T |
38849086 |
tgttggaagcttataaaccgtttcatatgctttgttctaaacgatgtgggacattttattgctc |
38849149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 402 - 508
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
402 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
501 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
|
| Q |
502 |
agccact |
508 |
Q |
| |
|
|| |||| |
|
|
| T |
38598798 |
agtcact |
38598804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38805708 - 38805639
Alignment:
| Q |
1 |
ttgagtcactcagttcatatcagtgattattcatgcatcacaatattcaaaattgttggaatatatcaaa |
70 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38805708 |
ttgagtcactcagttcacatcaaagattattcatgcattacaatattcaaaattgttggaatatatcaaa |
38805639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 405 - 469
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
405 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
469 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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