View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18232_low_21 (Length: 317)

Name: NF18232_low_21
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18232_low_21
NF18232_low_21
[»] chr6 (5 HSPs)
chr6 (1-307)||(17003021-17003312)
chr6 (180-307)||(25460983-25461111)
chr6 (29-110)||(17001536-17001617)
chr6 (109-162)||(17001426-17001479)
chr6 (111-140)||(17001134-17001163)
[»] chr7 (3 HSPs)
chr7 (164-307)||(46372261-46372405)
chr7 (187-307)||(46741977-46742099)
chr7 (267-307)||(29054324-29054365)
[»] chr1 (6 HSPs)
chr1 (164-307)||(37382544-37382688)
chr1 (164-307)||(41768614-41768758)
chr1 (164-307)||(35567306-35567451)
chr1 (164-307)||(4296340-4296484)
chr1 (164-307)||(50986358-50986503)
chr1 (267-307)||(11166347-11166387)
[»] chr2 (1 HSPs)
chr2 (164-307)||(13099052-13099196)
[»] chr5 (8 HSPs)
chr5 (164-304)||(34985866-34986008)
chr5 (247-307)||(20406992-20407052)
chr5 (109-162)||(1181212-1181265)
chr5 (69-110)||(1181114-1181155)
chr5 (269-307)||(2852592-2852630)
chr5 (269-307)||(2842449-2842487)
chr5 (1-45)||(1188070-1188112)
chr5 (260-297)||(42867091-42867128)
[»] chr3 (5 HSPs)
chr3 (167-307)||(42374298-42374441)
chr3 (187-307)||(16860153-16860275)
chr3 (198-307)||(36100059-36100170)
chr3 (269-307)||(4330241-4330279)
chr3 (278-307)||(21336080-21336109)
[»] chr4 (2 HSPs)
chr4 (187-307)||(14199773-14199895)
chr4 (247-307)||(36040148-36040208)
[»] chr8 (3 HSPs)
chr8 (252-307)||(13439052-13439107)
chr8 (165-227)||(37742963-37743027)
chr8 (263-307)||(44842618-44842662)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 17003021 - 17003312
Alignment:
Q  1 acacatcaaatcaaacacacccatttcacatcatgaacaaaaacaagattcatttttctattattagcttgctcacaagattcattgttttgtggatcaa 100  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||         ||||| ||| |   |||     
T  17003021 acacatcaaatcaaacacacccatttca--tcatgaacaaaaacaagattcatttttctattattagcttgct---------cattggtttct---tcac 17003106  T
Q  101 acataactggattcaaccttataagattatgttttgtttagataagatatgtatattatatgttctgttctatcaaagattcattgaaaaaacagacttt 200  Q
        ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003107 tttcaa--ggattcaaccttataagattatgttttgtttagataagatatgtatattatatgttctgttctatcaaagattcattgaaaaaacagacttt 17003204  T
Q  201 tttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgt 299  Q
    |||||||||||||||||||||||||||||||||| |||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17003205 tttatcagtagcatcggaactaaaaaagattcatgtacaaaaaaaaatttacatctctagacataaaacaaaatcacatccaatttcatatttgtattgt 17003304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 25460983 - 25461111
Alignment:
Q  180 ttcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacnnnnnnnnttt-acatctctagaaataaaacaaaatcacat 278  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||| | |||||||||||||||||||||||||||    
T  25460983 ttcattgaagaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaattttttttttatatctctagaaataaaacaaaatcacat 25461082  T
Q  279 ccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||    
T  25461083 ccaatttcatatttgtattgttgttgttg 25461111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 17001617 - 17001536
Alignment:
Q  29 catcatgaacaaaaacaagattcatttttctattattagcttgctcacaagattcattgttttgtggatcaaacataactgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17001617 catcatgaacaaaaacaagattcatttttctattattagcttgctcacaagattcattgttttttggatcaaacataactgg 17001536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 17001479 - 17001426
Alignment:
Q  109 ggattcaaccttataagattatgttttgtttagataagatatgtatattatatg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17001479 ggattcaaccttataagattatgttttgtttagataagatatgtatattatatg 17001426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 17001134 - 17001163
Alignment:
Q  111 attcaaccttataagattatgttttgttta 140  Q
    ||||||||||||||||||||||||||||||    
T  17001134 attcaaccttataagattatgttttgttta 17001163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 46372405 - 46372261
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaaa 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  46372405 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaatttacatctctagaaa 46372306  T
Q  263 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46372305 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 46372261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 46742099 - 46741977
Alignment:
Q  187 aaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacnnnnnnnnttt--acatctctagaaataaaacaaaatcacatccaatt 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||  |||||||||||||||||||||||||||||||||||    
T  46742099 aaaaaacagacttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatt 46742000  T
Q  285 tcatatttgtattgttgttgttg 307  Q
    ||||||||||| |||||||||||    
T  46741999 tcatatttgtactgttgttgttg 46741977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 29054365 - 29054324
Alignment:
Q  267 acaaaatcacatccaattt-catatttgtattgttgttgttg 307  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  29054365 acaacatcacatccaattttcatatttgtattgttgttgttg 29054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 37382544 - 37382688
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaaa 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  37382544 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaatttacatctctagaaa 37382643  T
Q  263 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37382644 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 37382688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 41768614 - 41768758
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaaa 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  41768614 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaatttacatctctagaaa 41768713  T
Q  263 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41768714 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 41768758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 35567306 - 35567451
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac--nnnnnnnntttacatctctagaa 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  35567306 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaagaaatttttacatctctagaa 35567405  T
Q  262 ataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35567406 ataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 35567451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 4296484 - 4296340
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaaa 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||||||    
T  4296484 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaagagattcatctacaaaaaaaaatttacatctctagaaa 4296385  T
Q  263 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4296384 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 4296340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 50986358 - 50986503
Alignment:
Q  164 tctgttctatcaaagattcattgaaaa-aacagacttttttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaa 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  50986358 tctgttctatcaaagattcattgaaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaatttacatctctagaa 50986457  T
Q  262 ataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  50986458 ataaaacaaaatcacatccaatttcatatttgttttgttgttgttg 50986503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 11166387 - 11166347
Alignment:
Q  267 acaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11166387 acaacatcacatccaatttcatatttgtattgttgttgttg 11166347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 13099052 - 13099196
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac-nnnnnnnntttacatctctagaaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||    
T  13099052 tctgttctatcaaagattcattgaaaaaacagacttttttatcggtagcatcggaactaaaaaagattcatctacaaaaaaaaatttacatctctagaaa 13099151  T
Q  263 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  13099152 taaaacaaaatcacatccaatttcaaatttgtattgttgttgttg 13099196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 164 - 304
Target Start/End: Original strand, 34985866 - 34986008
Alignment:
Q  164 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac--nnnnnnnntttacatctctagaa 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||    
T  34985866 tctgttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacaaaaaaaaaaattacatctctagaa 34985965  T
Q  262 ataaaacaaaatcacatccaatttcatatttgtattgttgttg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34985966 ataaaacaaaatcacatccaatttcatatttgtattgttgttg 34986008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 20407052 - 20406992
Alignment:
Q  247 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20407052 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 20406992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 1181212 - 1181265
Alignment:
Q  109 ggattcaaccttataagattatgttttgtttagataagatatgtatattatatg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1181212 ggattcaaccttataagattatgttttgtttagataagatatgtatattatatg 1181265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 1181114 - 1181155
Alignment:
Q  69 ttgctcacaagattcattgttttgtggatcaaacataactgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1181114 ttgctcacaagattcattgttttgtggatcaaacataactgg 1181155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 2852630 - 2852592
Alignment:
Q  269 aaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2852630 aaaatcacatccaatttcatatttgtattgttgttgttg 2852592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 2842487 - 2842449
Alignment:
Q  269 aaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2842487 aaaatcacatccaatttcagatttgtattgttgttgttg 2842449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1188070 - 1188112
Alignment:
Q  1 acacatcaaatcaaacacacccatttcacatcatgaacaaaaaca 45  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  1188070 acacatcaaatcaaacacacccattt--catcatgaacaaaaaca 1188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 42867128 - 42867091
Alignment:
Q  260 aaataaaacaaaatcacatccaatttcatatttgtatt 297  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  42867128 aaatagaacaaaatcacatccaatttcatatttttatt 42867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 167 - 307
Target Start/End: Complemental strand, 42374441 - 42374298
Alignment:
Q  167 gttctatcaaagattcattgaaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctac---nnnnnnnntttacatctctagaaat 263  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||            ||||||||||||||||    
T  42374441 gttctatcaaagattcattcaaaaaacagacttttttatcagtagcatcggaactaaaaaaggttcatctacaaaaaaaaaaaattacatctctagaaat 42374342  T
Q  264 aaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42374341 aaaacaaaatcacatccaatttcatatttgtattgttgttgttg 42374298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 16860153 - 16860275
Alignment:
Q  187 aaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacnnnnnnnnttt--acatctctagaaataaaacaaaatcacatccaatt 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||  |||||||||||||||||||||||||||||||||||    
T  16860153 aaaaaacagacttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatt 16860252  T
Q  285 tcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||    
T  16860253 tcatatttgtattgttgttgttg 16860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 36100170 - 36100059
Alignment:
Q  198 ttttttatcagtagcatcggaactaaaaaagattcatctacnnnnnnnnttt--acatctctagaaataaaacaaaatcacatccaatttcatatttgta 295  Q
    |||||||||||||||||| ||||||||||||||||||||||        |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  36100170 ttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatttcatatttgta 36100071  T
Q  296 ttgttgttgttg 307  Q
    | ||||||||||    
T  36100070 tagttgttgttg 36100059  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 4330241 - 4330279
Alignment:
Q  269 aaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  4330241 aaaattacatccaatttcatatttgtattgttgttgttg 4330279  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 21336080 - 21336109
Alignment:
Q  278 tccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||||||||    
T  21336080 tccaatttcatatttgtattgttgttgttg 21336109  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 14199773 - 14199895
Alignment:
Q  187 aaaaaacagacttttttatcagtagcatcggaactaaaaaagattcatctacnnnnnnnnttt--acatctctagaaataaaacaaaatcacatccaatt 284  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||        |||  |||||||||||||||||||||||||||||||||||    
T  14199773 aaaaaacacacttttttatcagtagcatcagaactaaaaaagattcatctacaaaagaaatttttacatctctagaaataaaacaaaatcacatccaatt 14199872  T
Q  285 tcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||    
T  14199873 tcatatttgtattgttgttgttg 14199895  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 36040208 - 36040148
Alignment:
Q  247 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040208 tttacatctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 36040148  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 13439052 - 13439107
Alignment:
Q  252 atctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13439052 atctctagaaataaaacaaaatcacatccaatttcatatttgtattgttgttgttg 13439107  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 37742963 - 37743027
Alignment:
Q  165 ctgttctatcaaagattcattgaaaaaacagac--ttttttatcagtagcatcggaactaaaaaa 227  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  37742963 ctgttctatcaaagattcattgataaaacagacttttttttatcagtagcatcggaactaaaaaa 37743027  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 44842662 - 44842618
Alignment:
Q  263 taaaacaaaatcacatccaatttcatatttgtattgttgttgttg 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  44842662 taaaacaaaatcacatccaatttcaaatttgtattgttgttgttg 44842618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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