View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_22 (Length: 317)
Name: NF18232_low_22
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 20103764 - 20103478
Alignment:
| Q |
15 |
aggaggagcacagagaacttctagagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctt |
114 |
Q |
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||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
20103764 |
aggaggaacacaaagaacttctagataaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcggcactcgtcgcaggcgtctcctt |
20103665 |
T |
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| Q |
115 |
tgctacatcaggcagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaatt |
214 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
20103664 |
tgctacatcaggcagcgtccccggaggtaatcagaatactggaaaaccaacattcgaaggacagcctgcattcgaagtattctctatatcttcgttaatt |
20103565 |
T |
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| Q |
215 |
ggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttg |
301 |
Q |
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| T |
20103564 |
ggactttacttctctgccactgcactcatcatgttccttgctttactcacttctcgaaaacaagtcgaagacttcaatagaaacttg |
20103478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 20079447 - 20079161
Alignment:
| Q |
15 |
aggaggagcacagagaacttctagagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctt |
114 |
Q |
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||||||| |||| |||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
20079447 |
aggaggaacacaaagaacttctacaaagcagcattgagtggttgaaagacacatcagagtcatgctcagttgtagcagcactcgtcgcaggcgtctcctt |
20079348 |
T |
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| Q |
115 |
tgctacatcaggcagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaatt |
214 |
Q |
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| T |
20079347 |
tgctacatcaggcagtgtccctggaggcaatgaccaatcagggaaaccaaatttcgaaggacagcctgcatttgaagtattctcgatatgttcattaatt |
20079248 |
T |
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| Q |
215 |
ggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttg |
301 |
Q |
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| T |
20079247 |
ggactttacttctcggtcactgcactaatcatgttcctttctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttg |
20079161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 19903647 - 19903881
Alignment:
| Q |
44 |
agcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggca |
143 |
Q |
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| T |
19903647 |
agcattgagtggttgaaaaacacaacagagtcaagctcaattgtggcagcactcgtcgcaggcgtctcctttgctacatcatgcactgtccctggaggca |
19903746 |
T |
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| Q |
144 |
atcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctctgccactgcactcat |
243 |
Q |
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|| | |||| ||||||| || ||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||||||| |||| ||||||| |
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| T |
19903747 |
atgaccaatcagggaaaccaaatttaaaaggacaacctgcatttgatttattctctacatgttcattaactggactttacttctctgtcacttcactcat |
19903846 |
T |
|
| Q |
244 |
catgttccttgctatactcacttctcgaaaacaag |
278 |
Q |
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| T |
19903847 |
ggtattcctttctatactcacttgtagaaaacaag |
19903881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 20130971 - 20130698
Alignment:
| Q |
28 |
agaacttctagagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggc |
127 |
Q |
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|||||||||| | || |||| | ||||||| | ||| ||| |||| |||||||||| |||||||||| |||| || || ||||||| || |||| | || |
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| T |
20130971 |
agaacttctacaaaatagcactcagtggttaatagaaacaacacaatcatgctcagctgtagcagcaatcgttgccggcatctccttcgcaacattaagc |
20130872 |
T |
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| Q |
128 |
agcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttct |
227 |
Q |
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|| ||||||||||||||| || ||||| ||| || ||| |||| ||| ||||||| |||| |||| | |||||||| ||||||||| ||||||| | |
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| T |
20130871 |
agtgtccccggaggcaataaggaaacagggaaatcatcatcagaagaacatactgcattagaaggattcgcaatatcttcattaattggagtttactttt |
20130772 |
T |
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| Q |
228 |
ctgccactgcactcatcatgttccttgctatactcacttctcgaaaacaagtcgaagacttcaatagaaacttg |
301 |
Q |
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||| ||||||||||||| |||||||| ||||||||| | |||||||||||||||||| || ||||||||||| |
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| T |
20130771 |
ctgtcactgcactcatcttgttcctttctatactcattgatcgaaaacaagtcgaagattttgatagaaacttg |
20130698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 23279784 - 23279848
Alignment:
| Q |
210 |
taattggactttacttctctgccactgcactcatcatgttccttgctatactcacttctcgaaaa |
274 |
Q |
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||||||| |||| ||||||| |||||||||| | |||||||| | |||||||||||||||||| |
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| T |
23279784 |
taattggtctttgtttctctgtcactgcactcgtaatgttcctgtccatactcacttctcgaaaa |
23279848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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