View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_26 (Length: 274)
Name: NF18232_low_26
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38456718 - 38456468
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38456718 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
38456619 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38456618 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38456519 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456518 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
38456468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38181357 - 38181108
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38181357 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38181258 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181257 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38181159 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38181158 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
38181108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 38189774 - 38190023
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38189774 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38189873 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38189874 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38189972 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189973 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
38190023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38208581 - 38208332
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
38208581 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38208482 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38208481 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38208383 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38208382 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
38208332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 38216999 - 38217248
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38216999 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38217098 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38217099 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38217197 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217198 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
38217248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 26032886 - 26033128
Alignment:
| Q |
2 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaaa |
101 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||| | ||||||||||||||||| | |||||||||| ||||||||||| ||||| |
|
|
| T |
26032886 |
gtggaaggtatgaacatggtgggggtggagccataggtatataa------gaagttccaataatgcttc---ccctgaaattaatgaaagtaacagtaaa |
26032976 |
T |
|
| Q |
102 |
tttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccac---atta |
198 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26032977 |
tttaacac-ctcgtataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacaatatta |
26033075 |
T |
|
| Q |
199 |
ttgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033076 |
ttgtagaacatgtttgggacatctaaaagtttttcatttatctcatcaaaaat |
26033128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 38447688 - 38447655
Alignment:
| Q |
181 |
gaagtacttcccacattattgtagaacatgtttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
38447688 |
gaagtacttcccacattattgtagaacatatttg |
38447655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 6067743 - 6067813
Alignment:
| Q |
181 |
gaagtacttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaat |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
6067743 |
gaagtacttcccacgttattgtagaacatgtttgggacatctaaaagtgtttcatttatctcataaaaaat |
6067813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38343063 - 38343008
Alignment:
| Q |
131 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
186 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38343008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38447256 - 38447201
Alignment:
| Q |
131 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
186 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38447201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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