View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_28 (Length: 268)
Name: NF18232_low_28
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 17826454 - 17826706
Alignment:
| Q |
16 |
attaagacccattgaagcgagcttatcagcacatctgttcctttccctatagatatgagtaaagatatagttcatgtgccggaggattaagagacaattt |
115 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
17826454 |
attaagacccattgaagcgagcttatcaacacatttgttcccttccctatagatatgagtaatgatatagttcatgtgctggaggattaagagacaattt |
17826553 |
T |
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| Q |
116 |
ttccat--gtttctaaggtcacaatgaatcaaagtgatatttttagctgcaagcaccgctaaggaggaatcagtttcaatccataggttgttccagcctc |
213 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17826554 |
ttccatctgtttctaaggtcacaaggaatcaaagtgatatttttagctgcaagcaccactaaggaggaatcagtttcaatccataggttgttccagcctc |
17826653 |
T |
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| Q |
214 |
tatgatgagctatctctactgccctcatagcagcagagagcttagcaacgaac |
266 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
17826654 |
tatgatgagctatctctattgccctcatagcagcagagagctcagcaacgaac |
17826706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 23921345 - 23921597
Alignment:
| Q |
16 |
attaagacccattgaagcgagcttatcagcacatctgttcctttccctatagatatgagtaaagatatagttcatgtgccggaggattaagagacaattt |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
23921345 |
attaagacccattgaagcgagcttatcaccacatctgttcccttccctatagatatgagtaatgatatagttcatgtgctggaggattaagagacaattt |
23921444 |
T |
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| Q |
116 |
ttccat--gtttctaaggtcacaatgaatcaaagtgatatttttagctgcaagcaccgctaaggaggaatcagtttcaatccataggttgttccagcctc |
213 |
Q |
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|||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23921445 |
ttccatctgtttctaaggtcacaaggaatcgaagtgatatttttagcggcaagcaccactaaggaggaatcagtttcaatccataggttgttccagcctc |
23921544 |
T |
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| Q |
214 |
tatgatgagctatctctactgccctcatagcagcagagagcttagcaacgaac |
266 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||| ||||||||| |
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| T |
23921545 |
tatgatgagctatctctattgccctcatagcagcagatagctctgcaacgaac |
23921597 |
T |
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