View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_30 (Length: 240)
Name: NF18232_low_30
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41066203 - 41066426
Alignment:
| Q |
1 |
ctggcgaggaaaggaacggcgcagatgcatgtttggtacgtgccgccacacgcgcggagattatcagcgatccagtcgtgcatgcgggttgcatggtgga |
100 |
Q |
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| T |
41066203 |
ctggcgaggaaaggaacggcgcagatgcatgtttggtacgtgccgccacacgcgcggagattatcagcgatccagtcgtgcatgcggtttgcatggtgga |
41066302 |
T |
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| Q |
101 |
tgagaccaggtaaactacccaataagggccagacacgtggacctttaagtgaacgtgtgatgaatgaaaaccatattaagtacgccgctatagcggttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41066303 |
tgagaccaggtaaactacccaataagggccagacacgtggacctttaagtgaacgtgtgatgaatgaaaaccatattaaatacgccgctatagcggttaa |
41066402 |
T |
|
| Q |
201 |
gatcattaaagcatttgatgcatc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
41066403 |
gatcattaaagcatttgatgcatc |
41066426 |
T |
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