View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_4 (Length: 755)
Name: NF18232_low_4
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_4 |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 665; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 14 - 755
Target Start/End: Original strand, 17002277 - 17003020
Alignment:
| Q |
14 |
catcaggagtaagaaccttgttcttaggatgaccacagttatacaaaaccattgaagaccaattctttctaggatacacagtttgaacagcaccatccat |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17002277 |
catcaggagtaagaaccttgttcttaggatgaccacagttatacaaaaccattgaagaccaattctttctaggatacacagtttgaacagcaccatccat |
17002376 |
T |
|
| Q |
114 |
ctttgtagtctcttttggagaataatcatgttgaacacacataatagcatacttatcctcaatcaaatctaccaattccttaatatcagctaaataaaga |
213 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17002377 |
ctttgtagtctcttttggagtataatcatgttgaacacacataatagcatacttatcctcaatcaaatctaccaattccttaatatcagctaaataaaga |
17002476 |
T |
|
| Q |
214 |
aaatcacaatccacaaacatagcccaaccttgataatttgccaaactaggtgttaagaatcttgtaaaagaaaactcagtgctctcaaattgacctcttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17002477 |
aaatcacaatccacaaacatagcccaaccttgataatttgccaaactaggtgttaagaatcttgtaaaagaaaactcagtgctctcaaattgacctcttt |
17002576 |
T |
|
| Q |
314 |
cacgccagtaaagaccactttttctcagatctgattgcttaattggtataatctcaacaggaatcgaagaccttttcatgattgaatgacgacatacctg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17002577 |
cacgccagtaaagaccactttttctcagatctgattgcttaattggtatgatctcaacaggaattgaagaccttttcatgattgaatgacgacatacctg |
17002676 |
T |
|
| Q |
414 |
aaatgcaatgtcttcacgtggatcataacccacaaagatcttgaagggtgcacctattccattaccatcaccattactagttggtaatggtgattggttt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17002677 |
aaatgcaatgtcttcacgtggatcataacccacaaagatcttgaagggtgcacctattccattaccatcaccattactagttggtaatggtgactggttt |
17002776 |
T |
|
| Q |
514 |
ttaccattgctcaaactcatctctgtaag--aagnnnnnnnncaacaaattaatgattaatctatgcagacacatcaaatcaaacacacccatttgatca |
611 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17002777 |
ttaccattgctcaaactcatctctgtaagaaaaagaaaaaaacaacaaattaatgattaatctatgcagacacatcaaatcaaacacacccatttgatca |
17002876 |
T |
|
| Q |
612 |
tgacagaaaaaacatagaaaaatgatttannnnnnnncacttttcagaatgatccaattgttttaataatgtgatacttgattaatttcaaagcattgct |
711 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17002877 |
tgacagaaaaaacatagaaaaatgatttattttttttcacttttcagaatgatccaattgttttaataatgtgatacttgattaatttcaaagcattgct |
17002976 |
T |
|
| Q |
712 |
caaactcatctctaaaagaacaaatcaatgattaatctatgtaa |
755 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17002977 |
caaactcatctctaaaagaacaaatcaatgattaatctatgtaa |
17003020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 17002995 - 17003054
Alignment:
| Q |
555 |
aacaaattaatgattaatctatgcagacacatcaaatcaaacacacccatttgatcatga |
614 |
Q |
| |
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||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
17002995 |
aacaaatcaatgattaatctatgtaaacacatcaaatcaaacacacccatttcatcatga |
17003054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 652 - 708
Target Start/End: Original strand, 17003583 - 17003639
Alignment:
| Q |
652 |
ttttcagaatgatccaattgttttaataatgtgatacttgattaatttcaaagcatt |
708 |
Q |
| |
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|||||||||||| ||| ||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
17003583 |
ttttcagaatgacccagttgttgtaataatgtgataattgattaatttcaaaacatt |
17003639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 612
Target Start/End: Original strand, 17003516 - 17003545
Alignment:
| Q |
583 |
acatcaaatcaaacacacccatttgatcat |
612 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
17003516 |
acatcaaatcaaacacacccatttgatcat |
17003545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 14 - 755
Target Start/End: Original strand, 1187337 - 1188069
Alignment:
| Q |
14 |
catcaggagtaagaaccttgttcttaggatgaccacagttatacaaaaccattgaagaccaattctttctaggatacacagtttgaacagcaccatccat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1187337 |
catcaggagtaagaaccttgttcttaggatgaccacagttatacaaaaccattgaagaccaattctttctaggatacacagtttgaacagcaccatccat |
1187436 |
T |
|
| Q |
114 |
ctttgtagtctcttttggagaataatcatgttgaacacacataatagcatacttatcctcaatcaaatctaccaattccttaatatcagctaaataaaga |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
1187437 |
ctttgtagtctcttttggagtataatcatgttgaacacacataatagcatacttatcctcaatcaaatctaacaattccttaatatcagctaaatagaga |
1187536 |
T |
|
| Q |
214 |
aaatcacaatccacaaacatagcccaaccttgataatttgccaaactaggtgttaagaatcttgtaaaagaaaactcagtgctctcaaattgacctcttt |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1187537 |
aaatcacaatccacaaacatagcccaaccttgataatttgccaaactaggtgttaagaatcttgtaaaagaaaactcagtgctctcaaattgacctcttt |
1187636 |
T |
|
| Q |
314 |
cacgccagtaaagaccactttttctcagatctgattgcttaattggtataatctcaacaggaatcgaagaccttttcatgattgaatgacgacatacctg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1187637 |
cacgccagtaaagaccactttttctcagatctgattgcttaattggtatgatctcaacaggaattgaagaccttttcatgattgaatgacgacatacctg |
1187736 |
T |
|
| Q |
414 |
aaatgcaatgtcttcacgtggatcataacccacaaagatcttgaagggtgcacctattccattaccatcaccattactagttggtaatggtgattggttt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1187737 |
aaatgcaatgtcttcacgtggatcataacccacaaagatcttgaagggtgcacctattccattaccattaccattactagttggtaatggtgattggttt |
1187836 |
T |
|
| Q |
514 |
ttaccattgctcaaactcatctctgtaag--aagnnnnnnnncaacaaattaatgattaatctatgcagacacatcaaatcaaacacacccatttgatca |
611 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1187837 |
ttaccattgctcaaactcatctctgtaagaaaaagaaaaaaacaacaaattaatgattaatctatgcagacacatcaaatcaaacacacccatttgatca |
1187936 |
T |
|
| Q |
612 |
tgacagaaaaaacatagaaaaatgatttannnnnnnncacttttcagaatgatccaattgttttaataatgtgatacttgattaatttcaaagcattgct |
711 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1187937 |
tgacagaaaaaacatagaaaaatgattttt----------ttttca-catgatccaattgttttaataatgcgatacttgattaatttcaaagcattgct |
1188025 |
T |
|
| Q |
712 |
caaactcatctctaaaagaacaaatcaatgattaatctatgtaa |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1188026 |
caaactcatctctaaaagaacaaatcaatgattaatctatgtaa |
1188069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 1188044 - 1188103
Alignment:
| Q |
555 |
aacaaattaatgattaatctatgcagacacatcaaatcaaacacacccatttgatcatga |
614 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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|
| T |
1188044 |
aacaaatcaatgattaatctatgtaaacacatcaaatcaaacacacccatttcatcatga |
1188103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 708
Target Start/End: Original strand, 1188175 - 1188299
Alignment:
| Q |
583 |
acatcaaatcaaacacacccatttgatcatg-acagaaaaaacatagaaaaatgatttannnnnnnncacttttcagaatgatccaattgttttaataat |
681 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| |||||||| |||||| || || || |||||||||||| ||| ||||| ||||||| |
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| T |
1188175 |
acatcaaatcaaacacacccatttgatcatatacaaaaaaaacagtgaaaaa--atgtaatcttttacagttttcagaatgacccagttgttgtaataat |
1188272 |
T |
|
| Q |
682 |
gtgatacttgattaatttcaaagcatt |
708 |
Q |
| |
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|||||| ||||||||||||||| |||| |
|
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| T |
1188273 |
gtgataattgattaatttcaaaacatt |
1188299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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