View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18232_low_5 (Length: 589)
Name: NF18232_low_5
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 13397134 - 13397532
Alignment:
| Q |
20 |
ttgatctcatcaatgtttgagccgactactaacaatggttgaaattttacttctgaaacccttccttgtgcataaagctttcaaacttcatatgcattgt |
119 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13397134 |
ttgatctcatcaatgtttgagccaactactaacaatggttgaaatttcacttctgaaacccttccttgtgcataaagctttcaaacttcatatacattgt |
13397233 |
T |
|
| Q |
120 |
cttggaccttgttttagtccatacatgctcttctttagtttacctagcatttttccca-ttcttttgagaatccttcaggttgttgcatgtatatatcct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||||||||||| |||||||||||||||| |
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| T |
13397234 |
cttggaccttgttttagtccatacatgctcttctttagttttcccaccattttccccacttcttatgagaatccttcaggttggtgcatgtatatatcct |
13397333 |
T |
|
| Q |
219 |
caattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcactggcaacaatacttaatagaaacatgatagtattgag |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13397334 |
caactaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaagattttcaatggcaacaatacttaatagaaacatgatagtattgag |
13397433 |
T |
|
| Q |
319 |
cttaactattggagcaaaaatttcatagtaaaattcttcgttttgttagaatccttgaccactattcgggatttgtatctcttagagacatcatatgttg |
418 |
Q |
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||||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13397434 |
cttaactattggaac-aaaatttcatagtaaaattcttccttttgctagaatccttgaccaccattcgggatttgtatctcttagagacatcatatgttg |
13397532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 449 - 582
Target Start/End: Original strand, 13397532 - 13397667
Alignment:
| Q |
449 |
gcttgttcccacgtatgatcggagatcaaagactttatttt--ttcatggaaagcttccacttacttgcacatgtggtcatatgcttcgttatatgtagt |
546 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13397532 |
gcttgttcccacgtatgatcagagatcaaagactttattttttttcatggaaagcttccacttacttgcacatgtggtcatatgtttcgttatatgtagt |
13397631 |
T |
|
| Q |
547 |
ttgctccttggttcaattaaatagttttgatgatgt |
582 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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| T |
13397632 |
ttgctccttggttcaattaaatagttctgatgatgt |
13397667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 70 - 412
Target Start/End: Complemental strand, 19944235 - 19943884
Alignment:
| Q |
70 |
ttctgaaacccttccttgtgcataaagctttcaaacttcatatgc-attgtcttggaccttgttttagtccatacatgctcttctttagtttacctagca |
168 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| | | | || |
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|
| T |
19944235 |
ttctggaaaccttccttgtgcatgaagctttcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctttagcctgcacacca |
19944136 |
T |
|
| Q |
169 |
tttt----tcccattcttttgagaatccttcaggttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattc |
264 |
Q |
| |
|
| || | || ||||| | |||||||||| ||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| |||| || |
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|
| T |
19944135 |
tattctctttcccttcttctaagaatccttcgggttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctc |
19944036 |
T |
|
| Q |
265 |
aagataaagattttcactggcaacaatacttaatagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttt |
361 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | || |||||||||||||||| || | |||||||||||| ||| |||| || | |||| ||| |
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|
| T |
19944035 |
aagatagagattttcactggcaacaatacttaagacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgtagtcaattccttccttt |
19943936 |
T |
|
| Q |
362 |
tgttagaatcc-ttgaccactattcgggatttgtatctcttagagacatcat |
412 |
Q |
| |
|
|| | |||||| |||||||||| ||||| |||||||||||| ||| |||||| |
|
|
| T |
19943935 |
tgctggaatcctttgaccactagtcgggctttgtatctctttgagccatcat |
19943884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 19943856 - 19943782
Alignment:
| Q |
414 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
488 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| |||| |
|
|
| T |
19943856 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
19943782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 70 - 401
Target Start/End: Complemental strand, 8273291 - 8272951
Alignment:
| Q |
70 |
ttctgaaacccttccttgtgcataaagctttcaaacttcatatgc-attgtcttggaccttgttttagtccatacatgctcttctttagtttacctagca |
168 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| | | | || |
|
|
| T |
8273291 |
ttctggaaaccttccttgtgcatgaagctttcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctttagcctgcacacca |
8273192 |
T |
|
| Q |
169 |
tttt----tcccattcttttgagaatccttcaggttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattc |
264 |
Q |
| |
|
| || | || ||||| | |||||||||| ||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
8273191 |
tattctctttcccttcttctaagaatccttcgggttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctc |
8273092 |
T |
|
| Q |
265 |
aagataaagattttcactggcaacaatacttaatagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttt |
361 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | || |||||||||||||||| || | |||||||||||| ||| |||| || | |||| ||| |
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|
| T |
8273091 |
aagatagagattttcactggcaacaatacttaagacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgtagtcaattccttccttt |
8272992 |
T |
|
| Q |
362 |
tgttagaatcc-ttgaccactattcgggatttgtatctctt |
401 |
Q |
| |
|
|| | |||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
8272991 |
tgctggaatcctttgaccactagtcgggctttgtatctctt |
8272951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 70 - 412
Target Start/End: Original strand, 796536 - 796887
Alignment:
| Q |
70 |
ttctgaaacccttccttgtgcataaagctttcaaacttcatatgc-attgtcttggaccttgttttagtccatacatgctcttctttagtttacctagca |
168 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| | | | || |
|
|
| T |
796536 |
ttctggaaaccttccttgtgcatgaaactttcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctttagcatgcacacca |
796635 |
T |
|
| Q |
169 |
tttt----tcccattcttttgagaatccttcaggttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattc |
264 |
Q |
| |
|
| || | || ||||| | |||||||||| ||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| |||| || |
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|
| T |
796636 |
tattctctttcccttcttctaagaatccttcgggttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctc |
796735 |
T |
|
| Q |
265 |
aagataaagattttcactggcaacaatacttaatagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttt |
361 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | || |||||||||||||||| || | |||||||||||| ||| |||| || | |||| ||| |
|
|
| T |
796736 |
aagatagagattttcactggcaacaatacttaagacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgtagtcaattccttccttt |
796835 |
T |
|
| Q |
362 |
tgttagaatcc-ttgaccactattcgggatttgtatctcttagagacatcat |
412 |
Q |
| |
|
|| |||||| |||||||||| ||||| |||||||||||| ||| |||||| |
|
|
| T |
796836 |
tgccggaatcctttgaccactagtcgggctttgtatctctttgagccatcat |
796887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 796915 - 796989
Alignment:
| Q |
414 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
488 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| |||| |
|
|
| T |
796915 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
796989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 8272912 - 8272838
Alignment:
| Q |
414 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
488 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| |||| |
|
|
| T |
8272912 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
8272838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 79 - 412
Target Start/End: Complemental strand, 6692276 - 6691934
Alignment:
| Q |
79 |
ccttccttgtgcataaagctttcaaacttcatatgc-attgtcttggaccttgttttagtccatacatgctcttctttagtttacctagcatttt----t |
173 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||| | | | ||| || | |
|
|
| T |
6692276 |
ccttccttgtgcatgaagctttcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctttagcctgcacaccatattctctt |
6692177 |
T |
|
| Q |
174 |
cccattcttttgagaatccttcaggttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaactattcaagataaag |
273 |
Q |
| |
|
|| ||||| |||||||||||| ||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||| |||| |||||||| || |
|
|
| T |
6692176 |
tcccttcttctgagaatccttcgggttggtgcatgtatatttcctccactaagtctccatgaagaaatgcagtcttcacatctaactgctcaagatagag |
6692077 |
T |
|
| Q |
274 |
attttcactggcaacaatacttaatagaaacatgatagtattgagcttaactattggagcaaaaatttca---tagtaaaattcttcgttttgttagaat |
370 |
Q |
| |
|
|||||||||||||||||||||||| | | || |||||||||||||||| || | |||||||||||| ||| ||| || | |||| ||||| | ||| |
|
|
| T |
6692076 |
attttcactggcaacaatacttaagacagacctgatagtattgagcttcaccactggagcaaaaatctcagtgcagtcaattccttccttttgctggaac |
6691977 |
T |
|
| Q |
371 |
cc-ttgaccactattcgggatttgtatctcttagagacatcat |
412 |
Q |
| |
|
|| |||||||||| ||||| |||||||||||| ||| |||||| |
|
|
| T |
6691976 |
cctttgaccactagtcgggctttgtatctctttgagccatcat |
6691934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 414 - 512
Target Start/End: Complemental strand, 6691906 - 6691804
Alignment:
| Q |
414 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt----tttcatggaaagcttccactt |
509 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||| |||| |||||||| ||||| |||||| |
|
|
| T |
6691906 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtctgattggagatcaaagacttcatttcctctttcatggcaagctcccactt |
6691807 |
T |
|
| Q |
510 |
act |
512 |
Q |
| |
|
||| |
|
|
| T |
6691806 |
act |
6691804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 38109876 - 38109807
Alignment:
| Q |
188 |
aatccttcaggttgttgcatgtatatatcctcaattaagtctccacgaagaaatgcagtcttcacatccaa |
258 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| ||||||| | || |||||||||||||||||||||| |
|
|
| T |
38109876 |
aatccttcaggttggtatatgtatatctcctcaactaagtcttcgtga-gaaatgcagtcttcacatccaa |
38109807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 38109971 - 38109938
Alignment:
| Q |
79 |
ccttccttgtgcataaagctttcaaacttcatat |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
38109971 |
ccttccttatgcataaagctttcaaacttcatat |
38109938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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