View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_7 (Length: 485)
Name: NF18232_low_7
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 27622761 - 27622296
Alignment:
| Q |
1 |
aacaatttatatcctccactctcgaaacttcacccactcctttatgttccctttcatttcgtattgaattgaaatcaccacacagaacaacaccccaaat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27622761 |
aacaatttatatcctccactt--gaaacttcacccactcctttatgttccccttcattacgtattgaattgaaatcaccacacagaacaacaccccaaat |
27622664 |
T |
|
| Q |
101 |
tttcctcaattatgtagctaatttgtaaccaatactctttcttactatggaagtcacatggaccataaacattaatcacatgcactatagctccattttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27622663 |
tttcctcaattatgtagctaatttgtaaccaatactctttcttactatggaagtcacatggaccataaacattaatcacatgcactatagctccattttg |
27622564 |
T |
|
| Q |
201 |
cttccacaaaccttctcccatcaaagtattcgataacattgatgtggaattcatttaacataattaagatcacacttagtaaatgtttacatgtannnnn |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27622563 |
cttccacaaaccttctcccatcaaagtattagataacattgatgtggaattcatttaacataattaagatcatacttagtaaatgtttacatgtattttt |
27622464 |
T |
|
| Q |
301 |
nngctaaaaaagtcaactaaatccaaaacataaataaatgtttcctcgatgtgactgtggaagtttgaacaagttaataggtagactcgcccactattta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27622463 |
tgtctaaaaaagtcaactaaatccaaaacataaataaatgtttcctcgatgcgactgtggaagtttgaacaagttaataggtagactcccccactattta |
27622364 |
T |
|
| Q |
401 |
tgtatatagagaaaacatgtttgcgactcaatatattctctctccagaatgaaatataagtaaaatgg |
468 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27622363 |
tgtatatagagaaaacatgtttgcgactcaacatattctctctccagaatgaaatataagtaaaatgg |
27622296 |
T |
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