View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18232_low_8 (Length: 443)
Name: NF18232_low_8
Description: NF18232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18232_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 269 - 424
Target Start/End: Complemental strand, 1917793 - 1917638
Alignment:
| Q |
269 |
ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc |
368 |
Q |
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| T |
1917793 |
ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc |
1917694 |
T |
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| Q |
369 |
ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatc |
424 |
Q |
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| T |
1917693 |
ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatc |
1917638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 1918029 - 1917858
Alignment:
| Q |
43 |
aatctgcattgtgtcgtgcatatcttcttcttgatgtcttcctttgcacccttaatgttggacttagnnnnnnnnnn----------ggaagagcaaaga |
132 |
Q |
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| T |
1918029 |
aatctgcattgtgtcgtgcatatcttcttcttgatgtcttcctttgcacccttaatgttggacttatgagtttttttttttttttttggaagagcaaaga |
1917930 |
T |
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| Q |
133 |
caaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg |
204 |
Q |
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| T |
1917929 |
caaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg |
1917858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 311 - 422
Target Start/End: Original strand, 29120805 - 29120917
Alignment:
| Q |
311 |
tatgacagagaaacaaaag-tatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccgaaagctactcaaacccaatct |
409 |
Q |
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| T |
29120805 |
tatgacagagaaacaaaaaatatatcacaacagctccataagcgatgctctgacctgtcttcttcgataaaacacaccaaaagctactcaaacccaatct |
29120904 |
T |
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| Q |
410 |
gtctaaataacga |
422 |
Q |
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| T |
29120905 |
gactaaaaaacga |
29120917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 32252633 - 32252551
Alignment:
| Q |
122 |
aagagcaaagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg |
204 |
Q |
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| T |
32252633 |
aagagcaaagacaaatattattgcattaaaacacaacacaaatacaatgtatactttgtgtgtgaaaatagatacagaaagtg |
32252551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 44516285 - 44516194
Alignment:
| Q |
121 |
gaagagcaaagacaaatattattgcattgaaacacaacacaagta--------caagatatactctgtgtgtgaaaatagatacaggaagtg |
204 |
Q |
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| T |
44516285 |
gaagagcaaagacaaattttattgaattgaaacacaacacaagtacaagtgtacaaggtatactttgtgtgtgaaaatagatacaggaagtg |
44516194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 44516069 - 44515990
Alignment:
| Q |
290 |
aaaataaaccaccaccactgatatgacagagaaac--aaaagtatatcacagcagcttcataagcgatgctccaacctgt |
367 |
Q |
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|||||||||||||||||| |||||||||| |||| |||| ||||||||| ||| ||||||||||||||| |||||| |
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| T |
44516069 |
aaaataaaccaccaccacaaatatgacagacaaacaaaaaaatatatcacaatggctccataagcgatgctccgacctgt |
44515990 |
T |
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