View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18233_high_2 (Length: 690)

Name: NF18233_high_2
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18233_high_2
NF18233_high_2
[»] chr4 (10 HSPs)
chr4 (13-671)||(55907924-55908582)
chr4 (138-511)||(3438006-3438381)
chr4 (52-598)||(547197-547743)
chr4 (181-482)||(1600814-1601118)
chr4 (210-307)||(12118870-12118967)
chr4 (215-491)||(21833760-21834039)
chr4 (210-307)||(1527763-1527860)
chr4 (321-413)||(641482-641574)
chr4 (216-257)||(53761398-53761439)
chr4 (443-491)||(6007006-6007054)
[»] chr2 (2 HSPs)
chr2 (13-671)||(1036860-1037518)
chr2 (41-116)||(32785526-32785601)
[»] scaffold0262 (1 HSPs)
scaffold0262 (127-367)||(276-507)
[»] scaffold0295 (1 HSPs)
scaffold0295 (13-134)||(354-475)
[»] chr8 (4 HSPs)
chr8 (41-526)||(17627397-17627885)
chr8 (493-650)||(44244710-44244857)
chr8 (52-127)||(17636137-17636212)
chr8 (541-663)||(17627239-17627361)
[»] chr1 (7 HSPs)
chr1 (138-311)||(19468064-19468237)
chr1 (131-278)||(29658545-29658692)
chr1 (131-278)||(29691060-29691207)
chr1 (131-278)||(29718572-29718719)
chr1 (138-280)||(33160874-33161016)
chr1 (217-258)||(52093223-52093264)
chr1 (319-427)||(17352195-17352303)
[»] chr6 (7 HSPs)
chr6 (131-260)||(7993792-7993921)
chr6 (132-254)||(6596562-6596684)
chr6 (216-259)||(8913680-8913723)
chr6 (216-255)||(6432596-6432635)
chr6 (210-254)||(6602821-6602865)
chr6 (132-260)||(7131978-7132106)
chr6 (301-337)||(6436761-6436798)
[»] chr7 (2 HSPs)
chr7 (138-280)||(10169726-10169868)
chr7 (138-280)||(10177251-10177393)
[»] chr5 (3 HSPs)
chr5 (145-276)||(38267147-38267278)
chr5 (220-276)||(37938351-37938407)
chr5 (81-164)||(32267785-32267868)
[»] chr3 (2 HSPs)
chr3 (215-485)||(51763828-51764101)
chr3 (220-248)||(33396948-33396976)


Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 13 - 671
Target Start/End: Complemental strand, 55908582 - 55907924
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55908582 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaaaaattagaattatcta 55908483  T
Q  113 cactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctaca 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55908482 cactcttttcccccaaacttgtgtgttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctaca 55908383  T
Q  213 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55908382 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 55908283  T
Q  313 atacgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908282 atacgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 55908183  T
Q  413 aaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908182 aaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtc 55908083  T
Q  513 atggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908082 atggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttc 55907983  T
Q  613 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtc 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907982 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtc 55907924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 138 - 511
Target Start/End: Complemental strand, 3438381 - 3438006
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    ||||||||| |  ||| |||||||||||||||| |||| ||| | ||| | |||  | | |||||||||   ||| ||||||||||||||||||||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaa 3438282  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgtatac---gacacttggataacaaag 334  Q
    |||||| ||||||  |||||||   | |||| | ||||||| | ||| ||    |||||||| ||||||||||||||||   ||||||||||||||| ||    
T  3438281 tcaccatgaaacatggacaacttgacaacatggcgatcatttagaaa-gtaagtttttgaagatccaaatgttgtatacattgacacttggataacagag 3438183  T
Q  335 agtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagat 434  Q
    |  | ||| || ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||| |||    
T  3438182 aaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaaggaagacctccaattgcaatagaggaaagtaattcatccgggat 3438083  T
Q  435 gcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgt 511  Q
     |   |||||||||||| |||||||||||| || |||| |||||||||| || ||||||||| ||||  ||||||||    
T  3438082 acatgaagacgacaaatcaagacaagttaatcccttcagactcaccaacaagtcaatgaagtgtgaattaatgttgt 3438006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 598
Target Start/End: Original strand, 547197 - 547743
Alignment:
Q  52 aaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgt 151  Q
    |||||||| ||||| |||||| || ||| |||| ||||| |  ||||||||||||| ||||||||||    ||| |   ||||| ||||||||||||  |    
T  547197 aaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacactctccatcccaatttttgtgagttccattttgatct 547296  T
Q  152 caataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaa 251  Q
    || ||||||||| |||||| |||||||| ||||||| |||  | | ||||||    | ||| | ||||||||||||| || |||||||||||||||||||    
T  547297 cactaagtgaagcacaattactaacgagtgcaaacaaggctaaatttgtgagttgcccacactgactaaggtttataaactccaaatcaccaagaaacaa 547396  T
Q  252 agacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgtatacga---cacttggataacaaagagtatattccaaca 348  Q
    |||||| ||    ||||  |||| | ||| |||    ||||||||||| || |||||||| ||| |    |||||||| || ||| |  |||||||| ||    
T  547397 agacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggatatgttggcacttggacaaaaaacaagatattccagca 547496  T
Q  349 taattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgaca 448  Q
    ||| ||||||||   |||||||||||||||||  |||||||||||| | || |||||||||||||  | |||||   ||||||||| ||  |||||   |    
T  547497 taactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaacatatccgagatacgtgaagaccgaa 547596  T
Q  449 aattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagaga 548  Q
    ||| ||||||||||||||| ||||||| || ||||||| |||| | ||  |||| ||   ||||||| ||||| ||||    |||| ||| ||| |||||    
T  547597 aatcaagacaagttaagcccttcaaacacatcaacgagtcaataaggtgcgaactaa---tgtcatgccttccctttgacggccatttaatggagagaga 547693  T
Q  549 cttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagtta 598  Q
    | ||||||  |||||| |||||||||||||||| |  ||||||| |||||    
T  547694 cctcaaagatggtctcacacggatagcagaagctatgccatcattagtta 547743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 181 - 482
Target Start/End: Original strand, 1600814 - 1601118
Alignment:
Q  181 gcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
    ||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||   || |||| | |||| ||||    
T  1600814 gcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatggcgatctttca 1600913  T
Q  281 taaacgtggcattttgaagttccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggac 377  Q
     |||   |||  ||| |||  |||||||||| ||||   |||||||||||||||||     || ||||| |||| ||||||| ||| ||| |  |||| |    
T  1600914 aaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcgaggtc 1601013  T
Q  378 aagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactc 477  Q
    ||| || ||||||||| ||  | || ||||||||||  | ||||| | ||||||||| ||| || | ||||| | ||||||||| || || |||||||||    
T  1601014 aagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaactc 1601113  T
Q  478 accaa 482  Q
    |||||    
T  1601114 accaa 1601118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 12118967 - 12118870
Alignment:
Q  210 acattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaat 307  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||||||   |||||    ||||||||||||| | ||||||||||| |||||||    
T  12118967 acatttactaatgtttatagacaacaaatcaccaagaaacaaagacaactcaatgacattccaatcattcataaacttagcattttgaagatccaaat 12118870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 491
Target Start/End: Complemental strand, 21834039 - 21833760
Alignment:
Q  215 cactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgtat 314  Q
    ||||||||||||| || | |||||||||||||||  || ||||||   | ||||  |||||||||| |||| ||  || || ||| ||||||||||| |     
T  21834039 cactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggac 21833940  T
Q  315 ac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaata 411  Q
    ||   |||  |||||||||||| |  | |||||| ||||| ||||||||||||| ||| | |||||||| ||  | |||||||||||| || ||||||||    
T  21833939 accatgacctttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaata 21833840  T
Q  412 gaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 491  Q
    ||  | || || |||||| ||||   ||||||   |||| |||||||||| || || ||||||||||| || ||||||||    
T  21833839 gagtagagtaactcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgagccaat 21833760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 1527860 - 1527763
Alignment:
Q  210 acattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaat 307  Q
    ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||   |||||    ||||||||||||| ||| ||||||||| |||||||    
T  1527860 acatttactaatgtttatagacaacaaatcactaagaaacgaagacaactcaatgacatgcaaatcattcataaacttggaattttgaagatccaaat 1527763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 641482 - 641574
Alignment:
Q  321 cttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaataga 413  Q
    ||||||||||||| |  | |||||| ||||| ||||||||||||||||   ||||||||||||  |||||||||| |||  ||||||||||||    
T  641482 cttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaataga 641574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 53761439 - 53761398
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagacaa 257  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  53761439 actaaggtttatggacaccaaatcaccaagaagcaaagacaa 53761398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 443 - 491
Target Start/End: Original strand, 6007006 - 6007054
Alignment:
Q  443 acgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 491  Q
    ||||||||| ||||||||||||||| |||||  ||||||||||| ||||    
T  6007006 acgacaaatcaagacaagttaagcctttcaatttcaccaacgagtcaat 6007054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 13 - 671
Target Start/End: Complemental strand, 1037518 - 1036860
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037518 aatatgatgttttcatttagtaactgaaaattgcaagttaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 1037419  T
Q  113 cactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctaca 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1037418 cactcttttcccccaaacttgtgtgttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctaca 1037319  T
Q  213 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1037318 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 1037219  T
Q  313 atacgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037218 atacgacacttggataacaaagagtatattccaacataattatagctggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 1037119  T
Q  413 aaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtc 512  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1037118 aaaaaagcaattcatccgaaatgcgcaaagatgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgcaccaatgttgtc 1037019  T
Q  513 atggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttc 612  Q
    ||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1037018 atgccttccatttgttctccatctaacaaatagagacttcaaagtaggtctctcacggatagcagaagcgacatcatcatgagttaaaaatggacatttc 1036919  T
Q  613 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtc 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036918 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtc 1036860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 32785601 - 32785526
Alignment:
Q  41 aattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacact 116  Q
    |||||| ||| ||||||||  ||||||||||| || ||| |||| |||||||| ||||||||||||| | ||||||    
T  32785601 aattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattagaattttgtacact 32785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 127 - 367
Target Start/End: Original strand, 276 - 507
Alignment:
Q  127 aaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggttta 226  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  276 aaacttgtgtgttccattttgatctcaataagtgaaggataattcctaacgagtgcaaacatggttgagtatgtgagcatgctacattcactaagattta 375  T
Q  227 tagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgtatacgacacttgga 326  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||         |||||    
T  376 tagacaccaaatcgccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttgt---------ttgga 466  T
Q  327 taacaaagagtatattccaacataattatagccggtgcaat 367  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  467 taacaaagagtagattccagcataattatagccggtgcaat 507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 475 - 354
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  475 aatatgatgttttcatttagtaactgaaaattgcaagctaaatgaagtgactttaattgatggtttaaaacacaatccattgaagaattagaattatcta 376  T
Q  113 cactcttttcccccaaacttgt 134  Q
    | | |||| |||||||||||||    
T  375 cgcactttccccccaaacttgt 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 41 - 526
Target Start/End: Complemental strand, 17627885 - 17627397
Alignment:
Q  41 aattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttc 140  Q
    ||||| |||| |||| ||| || ||||||||| || ||| |||  |||||| | ||||||||||||| | || ||||| |||||| | |  ||||  |||    
T  17627885 aattgaaagccaaatagagagattttaattgagggcttacaacgaaatccaccaaagaattagaattctttagactctcttccccaatagatgtgcattc 17627786  T
Q  141 cattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatca 240  Q
    |||||| |  ||| ||||||||||||| || |||||||| | ||||| ||| || ||   |||||| | ||| | ||||||||||| ||||||||||| |    
T  17627785 catttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaatta 17627686  T
Q  241 ccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgtatac---gacacttggataacaaagagt 337  Q
    ||||||||  ||||||||||    | ||  |||| ||||| |||    ||||  ||||| ||||||||||| ||||   ||||| |||||||||||||      
T  17627685 ccaagaaatgaagacaactcaaaaatatgttgattattcaaaaaataagcatactgaagatccaaatgttggatacattgacacatggataacaaagaaa 17627586  T
Q  338 atattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcg 437  Q
    ||||||||  |||| |||||    |||||| |  ||||||||| |||||||||| || | || | |||||||||||| | || ||   ||| ||||||||    
T  17627585 atattccagaataactatagttaatgcaatctctgaggacaagccttctcaaagaaataacttcaattgcaatagaagagaggaacatatctgagatgcg 17627486  T
Q  438 caaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttg 526  Q
    |||| ||| ||||| ||||   ||||| || ||||||||||||| |||| || | |||| |||||  ||||||||||||||||||||||    
T  17627485 caaaaacggcaaatcaagatttgttaaccctttcaaactcaccagcgagtcagtaaagtgtgaactgatgttgtcatggcttccatttg 17627397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 650
Target Start/End: Original strand, 44244710 - 44244857
Alignment:
Q  493 aagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcat 592  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||         ||||||||| |||| ||||||||   ||| |||||||| |  ||| |||    
T  44244710 aagtgtgaactaatgttgtcatagcttccatttgatctccat---------agagacttcgaagttggtctctcgttgatggcagaagcaatgccaacat 44244800  T
Q  593 gagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttaca 650  Q
    |||||| |  ||  |||||||||||| |||||||||||||||||||||||||||||||    
T  44244801 gagttagag-tgagcatttcaacatcctaacctcttcaagaaactcacaattcttaca 44244857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 17636212 - 17636137
Alignment:
Q  52 aaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttccccca 127  Q
    |||||||| ||||| |||||| |||||| |||| ||| |||||||||||||||||| |||||| | ||||||||||    
T  17636212 aaatggagagacttaaattgagggtttacaacaaaattcatcgaagaattagaattctctacattattttccccca 17636137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 663
Target Start/End: Complemental strand, 17627361 - 17627239
Alignment:
Q  541 gatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcac 640  Q
    |||| |||| ||||||  |||||||||||||| |||||||| |  ||||||  ||||||  ||| | | || |||| || ||||||||| ||||||||||    
T  17627361 gataaagacctcaaagatggtctctcacggatggcagaagcaatgccatcacaagttaaggatgaatacttgaacaacacaacctcttcgagaaactcac 17627262  T
Q  641 aattcttacataaatgcaaaagt 663  Q
    |||| ||||| || |||||||||    
T  17627261 aatttttacacaagtgcaaaagt 17627239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 138 - 311
Target Start/End: Complemental strand, 19468237 - 19468064
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| | ||||| ||  || | ||||||     ||||||||||||||||||||||||| |||    
T  19468237 ttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacactaaa 19468138  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttg 311  Q
    ||||||||||||||||||||||   | |||| ||||||||||| ||||   |||  |||||| |||||||||||    
T  19468137 tcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg 19468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 29658692 - 29658545
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29658692 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29658593  T
Q  231 caccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcatt 278  Q
    |||||||| | ||||||||||||| ||||| || ||||  ||||||||    
T  29658592 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcatt 29658545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 29691207 - 29691060
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29691207 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29691108  T
Q  231 caccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcatt 278  Q
    |||||||| | ||||||||||||| ||||| || ||||  ||||||||    
T  29691107 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcatt 29691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 29718719 - 29718572
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29718719 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29718620  T
Q  231 caccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcatt 278  Q
    |||||||| | ||||||||||||| ||||| || ||||  ||||||||    
T  29718619 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcatt 29718572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 33160874 - 33161016
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    ||||||||||| |||| ||||||||||||| ||  |||| || | |||||  || || ||||||||| | | |||| || ||||||||||||||||||||    
T  33160874 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaa 33160973  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
     || ||||||||||||| ||||| || ||||  ||||||||||    
T  33160974 gcagcaagaaacaaagagaactcggcaacatgttgatcattca 33161016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 52093223 - 52093264
Alignment:
Q  217 ctaaggtttatagacaccaaatcaccaagaaacaaagacaac 258  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  52093223 ctaaggtttatagacaccaaattaccaagaaccaaagacaac 52093264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 319 - 427
Target Start/End: Original strand, 17352195 - 17352303
Alignment:
Q  319 cacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaa 418  Q
    |||||||||||||||||  |  ||||| ||||| | ||||| ||| ||| ||| ||||||||||| || ||||||| |||  || ||||||||||  | |    
T  17352195 cacttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaaaggaaaaccctcctttgcaatagaggaga 17352294  T
Q  419 gcaattcat 427  Q
    |||||||||    
T  17352295 gcaattcat 17352303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 7993921 - 7993792
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    ||||| ||||||||||||  |||  |||||| ||||| || |||||||| | ||||| ||| || ||||||||||| | |||||||||||||||||||||    
T  7993921 ttgtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttataga 7993822  T
Q  231 caccaaatcaccaagaaacaaagacaactc 260  Q
    |||||||||||||||||  || ||||||||    
T  7993821 caccaaatcaccaagaagtaatgacaactc 7993792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 6596684 - 6596562
Alignment:
Q  132 tgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagac 231  Q
    ||||| || ||||||||  ||| |||| ||||||||||| || ||||||| ||||| ||| || ||||||||| |   ||| | | |||||||||||||     
T  6596684 tgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggctgattctgtgagccttgaacaatgattaaggtttatagaa 6596585  T
Q  232 accaaatcaccaagaaacaaaga 254  Q
    |||||||||||||||||||||||    
T  6596584 accaaatcaccaagaaacaaaga 6596562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 8913723 - 8913680
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagacaact 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaact 8913680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 6432596 - 6432635
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagac 255  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6432596 actaaggtttatagacaccaaatcagcaagaaacaaagac 6432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 6602865 - 6602821
Alignment:
Q  210 acattcactaaggtttatagacaccaaatcaccaagaaacaaaga 254  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  6602865 acattcactaaggtttatagacaccaaattagtaagaaacaaaga 6602821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 7131978 - 7132106
Alignment:
Q  132 tgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagac 231  Q
    ||||| |||||||||||  ||| |||||||||| || || |||||||| | | ||| |||  | ||||||||||| | ||| |||| |||||||| ||||    
T  7131978 tgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagcatccaacagtcacgaaggtttacagac 7132077  T
Q  232 accaaatcaccaagaaacaaagacaactc 260  Q
    |  || |||| ||||||| ||||||||||    
T  7132078 agtaagtcacgaagaaaccaagacaactc 7132106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 6436761 - 6436798
Alignment:
Q  301 tccaaatgttgtatac-gacacttggataacaaagagt 337  Q
    |||||||||||||||| |||||||||||||||||||||    
T  6436761 tccaaatgttgtatactgacacttggataacaaagagt 6436798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 10169868 - 10169726
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||  || | ||||| |     ||||| ||||||||||| |||||| |||    
T  10169868 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaa 10169769  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
    ||||||| ||||||||| |||||  | |||| |||||||||||    
T  10169768 tcaccaataaacaaagaaaactcatcaacatagtgatcattca 10169726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 10177393 - 10177251
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||  || | ||||| |     ||||| ||||||||||| |||||| |||    
T  10177393 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaa 10177294  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
    ||||||| ||||||||| |||||  | |||| |||||||||||    
T  10177293 tcaccaataaacaaagaaaactcatcaacatagtgatcattca 10177251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 38267278 - 38267147
Alignment:
Q  145 ttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaa 244  Q
    ||||| ||| ||||||||||||| ||||||||||| ||||| |  || || | || |||  |  |||| | |||||||||||||||||||| || |  ||    
T  38267278 ttgacctcactaagtgaaggacagttcctaacgagtgcaaaaaaagcagaatatgagaggttagtacaataactaaggtttatagacaccagatgaggaa 38267179  T
Q  245 gaaacaaagacaactctgcgacatcgtgatca 276  Q
    |||||||||||||||| || |||| |||||||    
T  38267178 gaaacaaagacaactcggcaacatggtgatca 38267147  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 37938351 - 37938407
Alignment:
Q  220 aggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatca 276  Q
    |||||||| ||||| ||||||  |||||||||||||||||| ||||||| |||||||    
T  37938351 aggtttattgacactaaatcaggaagaaacaaagacaactcagcgacatggtgatca 37938407  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 32267785 - 32267868
Alignment:
Q  81 aacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaagg 164  Q
    |||| |||||||| |||| |||||| | |||| |||||||| ||| | || |||||||||||||||||  ||| ||||||||||    
T  32267785 aacaaaatccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagg 32267868  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 485
Target Start/End: Complemental strand, 51764101 - 51763828
Alignment:
Q  215 cactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagttccaaatgttgtat 314  Q
    ||||||||||||| |||||||||| || ||||||||||||||| | | | ||||    |||||||| |||    |||| |||||| ||||||||||  |     
T  51764101 cactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgtatatcattcagaaaaccagcatcttgaagatccaaatgtttcaa 51764002  T
Q  315 ac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaata 411  Q
    ||   |||| ||||||| |||| |    |||||| ||||| ||||||| |||||| |||| |||||||| ||| ||||| |||||||| || |||||||     
T  51764001 acgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatc 51763902  T
Q  412 gaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacga 485  Q
    ||  | ||||| ||||| |||||   ||||  |  ||||| |||| |||| || || |||||||||||||||||    
T  51763901 gagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcaccaacga 51763828  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 33396948 - 33396976
Alignment:
Q  220 aggtttatagacaccaaatcaccaagaaa 248  Q
    |||||||||||||||||||||||||||||    
T  33396948 aggtttatagacaccaaatcaccaagaaa 33396976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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