View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18233_high_4 (Length: 414)

Name: NF18233_high_4
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18233_high_4
NF18233_high_4
[»] chr4 (6 HSPs)
chr4 (13-260)||(55908335-55908582)
chr4 (181-247)||(1600814-1600880)
chr4 (138-334)||(3438186-3438381)
chr4 (52-247)||(547197-547392)
chr4 (216-288)||(53761367-53761439)
chr4 (215-284)||(21833970-21834039)
[»] chr2 (2 HSPs)
chr2 (13-260)||(1037271-1037518)
chr2 (41-116)||(32785526-32785601)
[»] chr6 (12 HSPs)
chr6 (131-414)||(7993638-7993921)
chr6 (95-334)||(6403205-6403444)
chr6 (216-352)||(8913583-8913723)
chr6 (216-414)||(6432596-6432797)
chr6 (132-354)||(7131978-7132200)
chr6 (216-336)||(6594137-6594257)
chr6 (263-354)||(6423709-6423800)
chr6 (132-354)||(6596462-6596684)
chr6 (223-343)||(6436683-6436801)
chr6 (216-284)||(6588918-6588986)
chr6 (372-414)||(6436833-6436875)
chr6 (210-238)||(6602837-6602865)
[»] scaffold0295 (1 HSPs)
scaffold0295 (13-134)||(354-475)
[»] scaffold0262 (1 HSPs)
scaffold0262 (127-268)||(276-417)
[»] chr1 (6 HSPs)
chr1 (138-404)||(33160874-33161152)
chr1 (131-315)||(29658508-29658692)
chr1 (131-315)||(29691023-29691207)
chr1 (131-315)||(29718535-29718719)
chr1 (131-355)||(30827458-30827682)
chr1 (138-247)||(19468128-19468237)
[»] chr8 (2 HSPs)
chr8 (41-260)||(17627666-17627885)
chr8 (52-127)||(17636137-17636212)
[»] chr7 (3 HSPs)
chr7 (138-244)||(10169762-10169868)
chr7 (138-244)||(10177287-10177393)
chr7 (216-284)||(10615035-10615103)
[»] chr5 (2 HSPs)
chr5 (81-164)||(32267785-32267868)
chr5 (216-280)||(12846038-12846102)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 55908582 - 55908335
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55908582 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaaaaattagaattatcta 55908483  T
Q  113 cactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctaca 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55908482 cactcttttcccccaaacttgtgtgttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctaca 55908383  T
Q  213 ttcactaaggtttatagacaccaaatcaccaagaagtaatgacaactc 260  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||    
T  55908382 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactc 55908335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 1600814 - 1600880
Alignment:
Q  181 gcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaa 247  Q
    ||||||| ||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  1600814 gcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 1600880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 334
Target Start/End: Complemental strand, 3438381 - 3438186
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    ||||||||| |  ||| |||||||||||||||| |||| ||| | ||| | |||  | | |||||||||   ||| ||||||||||||||||||||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaa 3438282  T
Q  238 tcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaaca 334  Q
    |||||| |||  |  ||||||| | |||||||  ||||||| ||||| ||| |    | |||||| ||||||||||||||| |||||||||| ||||    
T  3438281 tcaccatgaaacatggacaacttgacaacatggcgatcatttagaaagtaagt-ttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 247
Target Start/End: Original strand, 547197 - 547392
Alignment:
Q  52 aaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgt 151  Q
    |||||||| ||||| |||||| || ||| |||| ||||| |  ||||||||||||| ||||||||||    ||| |   ||||| ||||||||||||  |    
T  547197 aaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacactctccatcccaatttttgtgagttccattttgatct 547296  T
Q  152 caataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaa 247  Q
    || ||||||||| |||||| |||||||| ||||||| |||  | | ||||||    | ||| | ||||||||||||| || |||||||||||||||    
T  547297 cactaagtgaagcacaattactaacgagtgcaaacaaggctaaatttgtgagttgcccacactgactaaggtttataaactccaaatcaccaagaa 547392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 53761439 - 53761367
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataa 288  Q
    |||||||||||| |||||||||||||||||||| || ||||| |   |||||||| |||  ||||||||||||    
T  53761439 actaaggtttatggacaccaaatcaccaagaagcaaagacaaatttacaacatgttgattgttcagaaaataa 53761367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 21834039 - 21833970
Alignment:
Q  215 cactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaa 284  Q
    ||||||||||||| || | |||||||||||||| | |  |||||| | |||||||| |||||||||||||    
T  21834039 cactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaa 21833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 1037518 - 1037271
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037518 aatatgatgttttcatttagtaactgaaaattgcaagttaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 1037419  T
Q  113 cactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctaca 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1037418 cactcttttcccccaaacttgtgtgttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctaca 1037319  T
Q  213 ttcactaaggtttatagacaccaaatcaccaagaagtaatgacaactc 260  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||    
T  1037318 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactc 1037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 32785601 - 32785526
Alignment:
Q  41 aattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacact 116  Q
    |||||| ||| ||||||||  ||||||||||| || ||| |||| |||||||| ||||||||||||| | ||||||    
T  32785601 aattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattagaattttgtacact 32785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 131 - 414
Target Start/End: Complemental strand, 7993921 - 7993638
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    ||||| ||||||||||||  |||  |||||| ||||| || |||||||| | ||||| ||| || ||||||||||| | |||||||||||||||||||||    
T  7993921 ttgtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttataga 7993822  T
Q  231 caccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggac 330  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7993821 caccaaatcaccaagaagtaatgacaactcagcaacatgtagatcattcagaaaataaataccattaagatctaaatgttgtatacatcgacacttggac 7993722  T
Q  331 aacaaatagtgaaattcattaatgtagctagtgtcattgtgaccgaggttgagttctttgagcaaagggaaacagttggcaatg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7993721 aacaaatagtgaaattcattaatgtagctagtgtcattgtgaccgaggttgagttctttgagcaaagggaaacaattggcaatg 7993638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 334
Target Start/End: Original strand, 6403205 - 6403444
Alignment:
Q  95 aagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccga 194  Q
    |||||| |||||| |||||||||||||     | ||||||||||||||||||||  ||| | |||||||||||||||  || ||| | ||||| ||  ||    
T  6403205 aagaatcagaattctctacactcttttttttaatacttgtgtgttccattttgatttcactgagtgaaggacaattcgaaaggagtgaaaacaaggttga 6403304  T
Q  195 gtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgcca 294  Q
     | | | |||||   ||||  | ||||||||||||||||||| |||   ||||  || || ||||| |||||||||| |||||||||||||||| ||  |    
T  6403305 ttttctaagcatcaaacatgaattaaggtttatagacaccaactcatgtagaaacaaagaaaactcagcaacatgtaaatcattcagaaaataactgtta 6403404  T
Q  295 ttaagatctaaatgttgtatacatcgacacttggacaaca 334  Q
    |||||||| |||||||||||||||| ||||||||| ||||    
T  6403405 ttaagatccaaatgttgtatacatctacacttggataaca 6403444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 8913723 - 8913583
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattc----agaaaataaatgccattaagatctaaatgttg 311  Q
    ||||||||||||||||||||||| ||||||||  || ||||||| | |||||||| ||||||||    | ||||||| ||| ||||||| | ||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  312 tatacatcgacacttggacaacaaatagtgaaattcattaa 352  Q
    || |||| |||||||||| ||||||| ||||| || |||||    
T  8913623 taaacattgacacttggataacaaatggtgaatttaattaa 8913583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 414
Target Start/End: Original strand, 6432596 - 6432797
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtata 315  Q
    ||||||||||||||||||||||||| ||||||  || ||| || ||||||||||| ||||||| ||||||| ||  |||  |||||| ||||||||||||    
T  6432596 actaaggtttatagacaccaaatcagcaagaaacaaagacgacccggcaacatgttgatcatttagaaaatgaagtccacaaagatccaaatgttgtata 6432695  T
Q  316 catcgacacttggacaacaaatagtgaaattcattaatgtagctagtgtc----attgtgaccgaggttgagttctttgagcaaagggaaacagttggca 411  Q
     ||| ||||||||| || | | | |||||| ||||| ||| | | |||      | ||||||| |||||||||| |||||||||||||||||| | ||||    
T  6432696 tatctacacttggataatagagattgaaatgcattagtgt-gattgtggataaaagtgtgaccaaggttgagttgtttgagcaaagggaaacaatcggca 6432794  T
Q  412 atg 414  Q
    |||    
T  6432795 atg 6432797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 354
Target Start/End: Original strand, 7131978 - 7132200
Alignment:
Q  132 tgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagac 231  Q
    ||||| |||||||||||  ||| |||||||||| || || |||||||| | | ||| |||  | ||||||||||| | ||| |||| |||||||| ||||    
T  7131978 tgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagcatccaacagtcacgaaggtttacagac 7132077  T
Q  232 accaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggaca 331  Q
    |  || |||| |||||   | |||||||| | |||||||  |||||||||||||||  |||   ||||||  ||||||||||||||||| |||||||| |    
T  7132078 agtaagtcacgaagaaaccaagacaactcagaaacatgttcatcattcagaaaatatgtgcacctaagattcaaatgttgtatacatcgccacttggata 7132177  T
Q  332 acaaatagtgaaattcattaatg 354  Q
    ||| | |||||| | ||||||||    
T  7132178 acatacagtgaattccattaatg 7132200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 336
Target Start/End: Complemental strand, 6594257 - 6594137
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtata 315  Q
    ||||||||| || |||  |||| || ||||||  || |||||||||||||||||| ||||||||||||||  |  |   |||||||  ||||||||||||    
T  6594257 actaaggttaatggacttcaaaccagcaagaaacaaagacaactcggcaacatgttgatcattcagaaaacgagcgtacttaagattcaaatgttgtata 6594158  T
Q  316 catcgacacttggacaacaaa 336  Q
    |||||||||||||| ||||||    
T  6594157 catcgacacttggataacaaa 6594137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 6423709 - 6423800
Alignment:
Q  263 caacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatg 354  Q
    |||||||| |||| ||||||||||||||||  | |||||  ||||||||||||||| |||||||||| ||||||| | ||| | ||||||||    
T  6423709 caacatgttgatccttcagaaaataaatgcagtcaagattcaaatgttgtatacattgacacttggataacaaattgcgaattccattaatg 6423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 354
Target Start/End: Complemental strand, 6596684 - 6596462
Alignment:
Q  132 tgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagac 231  Q
    ||||| || ||||||||  ||| |||| ||||||||||| || ||||||| ||||| ||| || ||||||||| |   ||| | | |||||||||||||     
T  6596684 tgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggctgattctgtgagccttgaacaatgattaaggtttatagaa 6596585  T
Q  232 accaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggaca 331  Q
    ||||||||||||||||  || || ||| | |||||||||  |||||| |||||| || |||  |  ||||  |||||||| ||| ||||||| || || |    
T  6596584 accaaatcaccaagaaacaaagagaacccagcaacatgtgtatcattaagaaaaaaagtgcattccagattcaaatgttgaataaatcgacaatttgata 6596485  T
Q  332 acaaatagtgaaattcattaatg 354  Q
    ||| | |||||| ||| ||||||    
T  6596484 acagagagtgaatttcgttaatg 6596462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 343
Target Start/End: Original strand, 6436683 - 6436801
Alignment:
Q  223 tttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgac 322  Q
    |||||||||||||||||| |||| |  || ||||||| ||||||||||  ||  |||||||| ||| | | || |||||| |||||||||||||   |||    
T  6436683 tttatagacaccaaatcagcaaggaagaaagacaacttggcaacatgtttattcttcagaaagtaactacgatcaagatccaaatgttgtatac--tgac 6436780  T
Q  323 acttggacaacaaatagtgaa 343  Q
    ||||||| |||||| ||||||    
T  6436781 acttggataacaaagagtgaa 6436801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 6588986 - 6588918
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaa 284  Q
    |||||||||||  |||||||||||||||||||   | ||||| ||| |||||||| |||||||||||||    
T  6588986 actaaggtttacggacaccaaatcaccaagaaaggaagacaattcgacaacatgttgatcattcagaaa 6588918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 6436833 - 6436875
Alignment:
Q  372 accgaggttgagttctttgagcaaagggaaacagttggcaatg 414  Q
    |||||||||||||| |||||||||||||||||| | |||||||    
T  6436833 accgaggttgagttgtttgagcaaagggaaacaatcggcaatg 6436875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 6602865 - 6602837
Alignment:
Q  210 acattcactaaggtttatagacaccaaat 238  Q
    |||||||||||||||||||||||||||||    
T  6602865 acattcactaaggtttatagacaccaaat 6602837  T

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Target: scaffold0295 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 475 - 354
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  475 aatatgatgttttcatttagtaactgaaaattgcaagctaaatgaagtgactttaattgatggtttaaaacacaatccattgaagaattagaattatcta 376  T
Q  113 cactcttttcccccaaacttgt 134  Q
    | | |||| |||||||||||||    
T  375 cgcactttccccccaaacttgt 354  T

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Target: scaffold0262 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 276 - 417
Alignment:
Q  127 aaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggttta 226  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  276 aaacttgtgtgttccattttgatctcaataagtgaaggataattcctaacgagtgcaaacatggttgagtatgtgagcatgctacattcactaagattta 375  T
Q  227 tagacaccaaatcaccaagaagtaatgacaactcggcaacat 268  Q
    ||||||||||||| |||||||  || |||||||| |||||||    
T  376 tagacaccaaatcgccaagaaacaaagacaactctgcaacat 417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 404
Target Start/End: Original strand, 33160874 - 33161152
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    ||||||||||| |||| ||||||||||||| ||  |||| || | |||||  || || ||||||||| | | |||| || ||||||||||||||||||||    
T  33160874 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaa 33160973  T
Q  238 tcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaat 337  Q
     || ||||||  || || ||||||||||||||| ||||||||||||||||| ||  ||| ||||| |||| ||||||| || |||| ||||| || | |     
T  33160974 gcagcaagaaacaaagagaactcggcaacatgttgatcattcagaaaataagtgtgatttagatccaaatattgtatatattgacagttggataagagag 33161073  T
Q  338 agtgaaattcattaatgtagctagtgtcatt------------gtgaccgaggttgagttctttgagcaaagggaaaca 404  Q
    |||||||| |||||||| || |||||| |||            ||||||||||||||||| ||||||||||||||||||    
T  33161074 agtgaaatccattaatgaagttagtgtgattgttgaactgagggtgaccgaggttgagttttttgagcaaagggaaaca 33161152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 29658692 - 29658508
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29658692 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29658593  T
Q  231 caccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtata 315  Q
    |||||||| | ||||||  || || ||||||||||||||| ||||||| ||||| | | ||| | ||||||| ||||||||||||    
T  29658592 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtata 29658508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 29691207 - 29691023
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29691207 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29691108  T
Q  231 caccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtata 315  Q
    |||||||| | ||||||  || || ||||||||||||||| ||||||| ||||||| | ||  | ||||||| ||||||||||||    
T  29691107 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtata 29691023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 29718719 - 29718535
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29718719 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29718620  T
Q  231 caccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtata 315  Q
    |||||||| | ||||||  || || ||||||||||||||| ||||||| ||||||| | ||  | ||||||| ||||||||||||    
T  29718619 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtata 29718535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 355
Target Start/End: Original strand, 30827458 - 30827682
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||||  ||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | ||||  | |||||||||||||    
T  30827458 ttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaacgagcgaaaacaaagctgattctgttagcttccaacatcgagtaaggtttataga 30827557  T
Q  231 caccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggac 330  Q
    ||| |||| |  |||||| || || || |||||||||||| ||||||| |||||| || ||  | ||||||| |||||||||||| || || | ||||||    
T  30827558 cactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtatatatggagagttggac 30827657  T
Q  331 aacaaatagtgaaattcattaatgt 355  Q
    || | | | |||||| |||||||||    
T  30827658 aagagagattgaaatccattaatgt 30827682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 19468237 - 19468128
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| | ||||| ||  || | ||||||     ||||||||||||||||||||||||| |||    
T  19468237 ttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacactaaa 19468138  T
Q  238 tcaccaagaa 247  Q
    ||||||||||    
T  19468137 tcaccaagaa 19468128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 17627885 - 17627666
Alignment:
Q  41 aattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttc 140  Q
    ||||| |||| |||| ||| || ||||||||| || ||| |||  |||||| | ||||||||||||| | || ||||| |||||| | |  ||||  |||    
T  17627885 aattgaaagccaaatagagagattttaattgagggcttacaacgaaatccaccaaagaattagaattctttagactctcttccccaatagatgtgcattc 17627786  T
Q  141 cattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatca 240  Q
    |||||| |  ||| ||||||||||||| || |||||||| | ||||| ||| || ||   |||||| | ||| | ||||||||||| ||||||||||| |    
T  17627785 catttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaatta 17627686  T
Q  241 ccaagaagtaatgacaactc 260  Q
    ||||||| | | ||||||||    
T  17627685 ccaagaaatgaagacaactc 17627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 17636212 - 17636137
Alignment:
Q  52 aaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttccccca 127  Q
    |||||||| ||||| |||||| |||||| |||| ||| |||||||||||||||||| |||||| | ||||||||||    
T  17636212 aaatggagagacttaaattgagggtttacaacaaaattcatcgaagaattagaattctctacattattttccccca 17636137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 10169868 - 10169762
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||  || | ||||| |     ||||| ||||||||||| |||||| |||    
T  10169868 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaa 10169769  T
Q  238 tcaccaa 244  Q
    |||||||    
T  10169768 tcaccaa 10169762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 10177393 - 10177287
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||  || | ||||| |     ||||| ||||||||||| |||||| |||    
T  10177393 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaa 10177294  T
Q  238 tcaccaa 244  Q
    |||||||    
T  10177293 tcaccaa 10177287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 10615035 - 10615103
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaa 284  Q
    |||||||||||| |||| |||||||||||||| | | ||||| | | |||||||| |||||||||||||    
T  10615035 actaaggtttatggacatcaaatcaccaagaaatgaagacaattggacaacatgttgatcattcagaaa 10615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 32267785 - 32267868
Alignment:
Q  81 aacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaagg 164  Q
    |||| |||||||| |||| |||||| | |||| |||||||| ||| | || |||||||||||||||||  ||| ||||||||||    
T  32267785 aacaaaatccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagg 32267868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 12846038 - 12846102
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattca 280  Q
    ||||| ||||||||| | ||||||||||||||| || || ||||  ||||||||| |||||||||    
T  12846038 actaacgtttatagaaatcaaatcaccaagaagcaaagataacttagcaacatgttgatcattca 12846102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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