View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18233_high_5 (Length: 369)
Name: NF18233_high_5
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18233_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 33681297 - 33680957
Alignment:
| Q |
18 |
attcttgtatatgctatatcgaagatgtagaatataggccataaaaacaatagtttgaaatgaatatgttgattcaaaatgttcgattaaaacatataca |
117 |
Q |
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| T |
33681297 |
attcttgtatatgctatatcgaagatgtagaatataggccataaaaacaatagtttgaaatgaatatgttgattcaaaatgttcgattaaaacatataca |
33681198 |
T |
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| Q |
118 |
caacacctaatttttaattatatatgaaaaattacacatgaatgaaagacaaatgaacaatgagatgtatcattatgtctctttaaatggcgaaatcaat |
217 |
Q |
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| T |
33681197 |
caacacctagtttttaattatatatgaaaaattacacatgaatgaaagacaaatgaacaatgagatgtatcgttatgtctttttaaatggcggaatcaat |
33681098 |
T |
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| Q |
218 |
catgatacacacaaaattcataaacccatgagacaaatccaaaaatatccaccatgataaacggcatttatatttcaactagaaaccaatacaaatgctg |
317 |
Q |
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| T |
33681097 |
catgatacacacaaaattcataaacccatgagacaaatccaaaaatatccaccatgataaacggcatttatatttcaactagaaaccaatacaaatgctg |
33680998 |
T |
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| Q |
318 |
ggtgaatcggtcgatcacttaactatatatattgcacctat |
358 |
Q |
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| T |
33680997 |
ggtgagtcggtcgatcacttaactatatatattgcacctat |
33680957 |
T |
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