View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18233_low_1 (Length: 908)

Name: NF18233_low_1
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18233_low_1
NF18233_low_1
[»] chr3 (3 HSPs)
chr3 (1-891)||(45382494-45383384)
chr3 (333-422)||(50084778-50084869)
chr3 (591-637)||(47362558-47362604)
[»] chr6 (9 HSPs)
chr6 (586-666)||(27661703-27661783)
chr6 (586-623)||(26650237-26650274)
chr6 (586-623)||(26756205-26756242)
chr6 (582-622)||(12627824-12627864)
chr6 (586-626)||(29449688-29449728)
chr6 (511-561)||(8148268-8148318)
chr6 (514-567)||(20809178-20809231)
chr6 (586-615)||(28783014-28783043)
chr6 (568-625)||(34057962-34058019)
[»] chr1 (3 HSPs)
chr1 (318-416)||(31686728-31686828)
chr1 (268-421)||(25101927-25102080)
chr1 (577-622)||(264615-264660)
[»] chr5 (6 HSPs)
chr5 (361-415)||(27803033-27803089)
chr5 (586-625)||(28136673-28136712)
chr5 (318-422)||(41978263-41978369)
chr5 (318-386)||(16265448-16265516)
chr5 (586-623)||(645342-645379)
chr5 (577-622)||(11601688-11601733)
[»] chr7 (3 HSPs)
chr7 (586-626)||(43160491-43160531)
chr7 (577-624)||(10893872-10893919)
chr7 (586-628)||(650524-650566)
[»] chr8 (6 HSPs)
chr8 (519-561)||(14229600-14229642)
chr8 (586-626)||(32691750-32691790)
chr8 (359-412)||(40688136-40688191)
chr8 (577-625)||(41686804-41686852)
chr8 (359-422)||(31344424-31344487)
chr8 (334-412)||(7620090-7620172)
[»] chr2 (2 HSPs)
chr2 (532-628)||(9956949-9957045)
chr2 (335-422)||(9151330-9151417)
[»] chr4 (2 HSPs)
chr4 (586-636)||(10164460-10164510)
chr4 (586-624)||(28890768-28890806)


Alignment Details
Target: chr3 (Bit Score: 713; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 1 - 891
Target Start/End: Complemental strand, 45383384 - 45382494
Alignment:
Q  1 tgcaccgcactcaaaaactgacttgagcgtttagtgtttgcatatacaacacccctgccaaagagctcagccatcgtcctcagttgcgtttcatcaaccg 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383384 tgcaccgcactcaaaaactgacttgagcgtt-agtgtttgcatatacaacacccctgccaaagagctcagccatcgtcctcagttgcgtttcatcaaccg 45383286  T
Q  101 accatccatctcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgtt 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383285 accatcgatctcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgtt 45383186  T
Q  201 atttaagggtctatttacttcgtaaacacattttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacac 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383185 atttaagggtctatttacttcgtaaacacgttttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacac 45383086  T
Q  301 atttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaa 400  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45383085 atttcaagaaataacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattattcacttcaagagtcttttctcattgttaacaa 45382986  T
Q  401 gtaaaagtaacac-aaaatttagnnnnnnnnnnnntaagccgtaattctgtatgacaattaagtttcatagaagtggagaaagcaaaggaagtgactaat 499  Q
    ||||||||||||| |||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  45382985 gtaaaagtaacacaaaaatttagaaaaataaaaaataagccgtaattctgtatgacaa-taagtttcatagaagtggagaaagcaaaggaattgactaat 45382887  T
Q  500 tggtaaataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtc-----------tgtcaccaacatatg 588  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||           ||||||| |||||||    
T  45382886 tggtaaataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatg 45382788  T
Q  589 tgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctctggtgttcatgtcag 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||         | ||||    
T  45382787 tgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctc---------tctcag 45382697  T
Q  689 tgcttcatagataatgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattgtattctctcagcagtgtca 788  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382696 tgcttcatagataacgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattgtattctctcagcagtgtca 45382597  T
Q  789 tcagtgagcttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctcttttctaacttcttcaggta 888  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382596 tcagtgagcttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctcttttctaacttcttcaggta 45382497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 50084869 - 50084778
Alignment:
Q  333 acattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaaatttag 422  Q
    |||||||||||||||| | || | |||  ||||||||||| ||||||||||  |||||| |||||||||||||||| ||| ||||| |||||    
T  50084869 acattttcattgtttctggaaattcaaggcaattgttcacatcaagagtctcctttctccttgttaacaagtaaaattaatacaaattttag 50084778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 637
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  591 attacattcaaatatgttattttcttaaattactactgatgttgacg 637  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 586 - 666
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 666  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 586 - 623
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattac 623  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 586 - 623
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattac 623  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 582 - 622
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  582 acatatgtgattacattcaaatatgttattttcttaaatta 622  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 626
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattactac 626  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  511 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 561  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 567
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  514 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 567  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 615
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  586 atgtgattacattcaaatatgttattttct 615  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 625
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  568 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 625  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 416
Target Start/End: Complemental strand, 31686828 - 31686728
Alignment:
Q  318 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 415  Q
    ||||||| || ||| |||||||||||||||  | || | ||| ||||| |||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  31686828 aaaatagttcttttgacattttcattgttttaggaaatgcaagacaatcgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 31686729  T
Q  416 a 416  Q
    |    
T  31686728 a 31686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 25102080 - 25101927
Alignment:
Q  268 gagagaagattaaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattg 367  Q
    |||||||||| |||||||| ||||||| ||  || |||| ||||  |  ||||||||||||||   |||||||||| |||||  || ||||| |||| ||    
T  25102080 gagagaagataaaatgctagctagggacgatgcacttca-gaaaaaaataaaaatagctcattaggcattttcattatttccagaaatacaagacaaatg 25101982  T
Q  368 ttcacttcaagagtct-tttctcattgttaacaagtaaaagtaacacaaaattta 421  Q
    ||| || ||||||||| |||||| ||||||| |||||||| | ||||||| ||||    
T  25101981 ttccctccaagagtctctttctccttgttaagaagtaaaacttacacaaatttta 25101927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 622
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  577 caccaacatatgtgattacattcaaatatgttattttcttaaatta 622  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 27803033 - 27803089
Alignment:
Q  361 acaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 415  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  27803033 acaattgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 27803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 586 - 625
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattacta 625  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 318 - 422
Target Start/End: Original strand, 41978263 - 41978369
Alignment:
Q  318 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagag--tcttttctcattgttaacaagtaaaagtaacacaa 415  Q
    ||||||| || ||| |||||||||||||||||| || | ||| |||||| |||||||||||||  |||| |||  ||| ||||||||||||  |||||||    
T  41978263 aaaatagttcttttgacattttcattgtttccggaaatgcaaaacaattcttcacttcaagagcctcttatcttcttgctaacaagtaaaaacaacacaa 41978362  T
Q  416 aatttag 422  Q
    | |||||    
T  41978363 attttag 41978369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 16265448 - 16265516
Alignment:
Q  318 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtctttt 386  Q
    |||||||||  ||| |||||||||||||||| | || | ||| |||| |||||||||||||||||||||    
T  16265448 aaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctttt 16265516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 623
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattac 623  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 622
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  577 caccaacatatgtgattacattcaaatatgttattttcttaaatta 622  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 626
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattactac 626  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 577 - 624
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  577 caccaacatatgtgattacattcaaatatgttattttcttaaattact 624  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 628
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattactactg 628  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  519 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 561  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 626
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattactac 626  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 40688191 - 40688136
Alignment:
Q  359 acacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaaca 412  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  40688191 acacaattgttcacttcaagagtctagtatctcattgttaccaagtaaaattaaca 40688136  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 577 - 625
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  577 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 625  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 31344424 - 31344487
Alignment:
Q  359 acacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 422  Q
    |||||| ||||||||||||||||||| |||| |||| |  |||||||| ||||||||| |||||    
T  31344424 acacaagtgttcacttcaagagtcttatctctttgtcaggaagtaaaattaacacaaactttag 31344487  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 7620090 - 7620172
Alignment:
Q  334 cattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct----tttctcattgttaacaagtaaaagtaaca 412  Q
    |||||||||| |||  |||| | ||| ||||||||| |||||||||||||    |||||| |||||||||||||||| |||||    
T  7620090 cattttcattatttttgaaaatgcaagacaattgttaacttcaagagtctctcttttctccttgttaacaagtaaaactaaca 7620172  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 628
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  532 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 628  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Original strand, 9151330 - 9151417
Alignment:
Q  335 attttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 422  Q
    |||||||| ||||||  || | ||| ||||||||||||||||||||||||||||| || ||| || |||  | ||||||||| |||||    
T  9151330 attttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttctctttattaccatgtaggaataacacaaattttag 9151417  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 636
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 636  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 624
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  586 atgtgattacattcaaatatgttattttcttaaattact 624  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

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