View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18233_low_2 (Length: 794)
Name: NF18233_low_2
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18233_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 297 - 780
Target Start/End: Original strand, 2348867 - 2349352
Alignment:
| Q |
297 |
aagctagcattcaagagtaatacaact--aattctacttctatccaccaacctcatccaaaacacaacaccatctagctacaatggatttagatttaagc |
394 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348867 |
aagctagcattcaagagtaatacaactctaattctacttctatccaccaacctcgtacaaaacacaacaccatctagctacaatggatttagatttaagc |
2348966 |
T |
|
| Q |
395 |
agtttaataaacgctacaacaattgcactcctaatttctctaattcccctatgtttatttctatttggactctcaaaattttctaacagcaaaaacaaag |
494 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2348967 |
agtttaataaacgccacaacaattgcactcctaatttctctaattcccctatgtttatttctatttggactctcaaaattttctcacagcaaaaacaaag |
2349066 |
T |
|
| Q |
495 |
aagcacccatagctaaaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataa |
594 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2349067 |
aagcacccatagctaaaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataa |
2349166 |
T |
|
| Q |
595 |
atatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggtt |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2349167 |
atatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggtt |
2349266 |
T |
|
| Q |
695 |
gtttcgtctcgtcccaagctcatttcaaccgaacacttagcctatggaggagccgtatttggctttggaccttatggtccttattg |
780 |
Q |
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| T |
2349267 |
gtttcgtctcgtcccaagctcatttcaaccgaacacttagcctatggaggagccgtatttggctttggaccttatggtccttattg |
2349352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 2348589 - 2348802
Alignment:
| Q |
19 |
ggggcatgtggttgatagttgtctttcacaactttaaacgatgtcatcaaacgtcttaaaaatgactacctaatcgtaactcaatccgataatcttagcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2348589 |
ggggcatgtggttgatagttgtctttcacaactttaaacgatgtcatcaaacgtcttaaaaatgactatctaatcgtaactcaatccgataatcttagcc |
2348688 |
T |
|
| Q |
119 |
gtggtaattttcaaattccaaaacaacacttaaaatcgtgttcaagatcaattataatttacgttatgtgagggagatatatattattggtttttgtaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348689 |
gtggtaattttcaaattccaaaacaacacttaaaatcgtgttcaagatcaattataatttacgttatgtgagggagatatatattattggtttttgtaca |
2348788 |
T |
|
| Q |
219 |
catatccacaaaca |
232 |
Q |
| |
|
||||| |||||||| |
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|
| T |
2348789 |
catattcacaaaca |
2348802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 399 - 780
Target Start/End: Original strand, 2305601 - 2305982
Alignment:
| Q |
399 |
taataaacgctacaacaattgcactccta-atttctctaattcccctatgtttatttctatttggactctcaaaattttctaacagcaaaaacaaagaag |
497 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| || ||||||||||||| |||||||||||| ||||||||||| | | ||||||| |||||| | |
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| T |
2305601 |
taataaactcaacaacaattgcactcctttatttcatta-ttcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaagagg |
2305699 |
T |
|
| Q |
498 |
cacccatagctaaaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaata |
597 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||| || || |||||| | |||||||||||||| |
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| T |
2305700 |
caccaatagccgaaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagggtcttaggtaccttagctgataaata |
2305799 |
T |
|
| Q |
598 |
tggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtt |
697 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
2305800 |
tggaccattattcaccatcaagcttggttctaaacgtgctttaattctcaacaattgggaaatggccaaggaatgttttactacacacgacatggtcgtt |
2305899 |
T |
|
| Q |
698 |
tcgtctcgtcccaagctcatttcaaccgaacacttagcctatggaggagccgtatttggctttggaccttatggtccttattg |
780 |
Q |
| |
|
||||||||||||||||| || |||| ||||||| | |||| ||||| | ||||| ||||| || |||||||||||||| |
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| T |
2305900 |
tcgtctcgtcccaagcttgttgcaacgaaacacttgggctataatggagcaatgtttggttttggtccgtatggtccttattg |
2305982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 437 - 732
Target Start/End: Original strand, 2337960 - 2338255
Alignment:
| Q |
437 |
attcccctatgtttatttctatttggactctcaaaattttctaacagcaaaaacaaagaagcacccatagctaaaggtgcatggccaatacttggtcacc |
536 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || | | |||||||| ||||| || || ||||| ||||||||||||||||||||||||| | |
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|
| T |
2337960 |
attcccctatgtttgattctatttggattctcaaaagttgttcatagcaaaaataaagaggcgccaatagccgaaggtgcatggccaatacttggtcatc |
2338059 |
T |
|
| Q |
537 |
tcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatattcactatcaagcttggttctaaacatgc |
636 |
Q |
| |
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|| || ||||| |||||| |||| ||||||| ||||| |||||| | ||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
2338060 |
tctcactttttcgtggcacacaatcaccccatagagtcttaggtaccttagctgataaatatggaccattattcaccatcaagcttggcactaaacatgc |
2338159 |
T |
|
| Q |
637 |
tttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtttcgtctcgtcccaagctcatttcaaccgaacactt |
732 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||| ||||| || |||| |||||||| |
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|
| T |
2338160 |
tttaatactcaacaattgggaaatggccaaggaatgtttcactacgaacgacacggtcgtttcgtctcgtccaaagcttgttgcaacagaacactt |
2338255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 678
Target Start/End: Original strand, 2366020 - 2366188
Alignment:
| Q |
510 |
aaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatatt |
609 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | || || |||| |||| || ||| |||||| |||| ||||||||||||||||| | || |
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|
| T |
2366020 |
aaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgcattggctgataaatatggacccttgtt |
2366119 |
T |
|
| Q |
610 |
cactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac |
678 |
Q |
| |
|
|||||| ||| ||||||| |||| |||||| | |||| |||||||||||| || |||||||||||||| |
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|
| T |
2366120 |
cactattaagattggttccaaacgtgctttggttcttagcaattgggaaatggcaaaggaatgtttcac |
2366188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 699
Target Start/End: Original strand, 2295121 - 2295236
Alignment:
| Q |
584 |
ttagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacac |
683 |
Q |
| |
|
|||||||| | ||||||||| |||||||| |||||||| ||| ||| ||||||||| |||| |||||||||||| | ||||| ||||||||||| | | |
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|
| T |
2295121 |
ttagctgacagatatggacccatattcacaatcaagctaggtgctacacatgctttggtactaaacaattgggaattagccaaagaatgtttcaccaaaa |
2295220 |
T |
|
| Q |
684 |
acgacatggttgtttc |
699 |
Q |
| |
|
| ||||| |||||||| |
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|
| T |
2295221 |
atgacatagttgtttc |
2295236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 678
Target Start/End: Original strand, 2355735 - 2355901
Alignment:
| Q |
512 |
ggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaac-caccccacagagttttaggtccattagctgataaatatggaccaatattc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||| ||| |||| || ||| ||||||| |||||||||||||||||||| | ||| |
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|
| T |
2355735 |
ggtgcatggccaatacttggtcacctccca-ttgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttc |
2355833 |
T |
|
| Q |
611 |
actatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac |
678 |
Q |
| |
|
|| ||||| |||||||| ||| ||||||| |||||| ||||| |||||| || |||||||||||||| |
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|
| T |
2355834 |
accatcaaacttggttccaaaaatgctttggtacttagcaattcggaaatggcgaaggaatgtttcac |
2355901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 678
Target Start/End: Original strand, 2361481 - 2361584
Alignment:
| Q |
575 |
ttaggtccattagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtt |
674 |
Q |
| |
|
|||||| |||| ||||||||||||||||| | |||||||| ||||||||||| |||| |||||| | ||| |||||||||||| || |||||||||| |
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|
| T |
2361481 |
ttaggtgcattggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtt |
2361580 |
T |
|
| Q |
675 |
tcac |
678 |
Q |
| |
|
|||| |
|
|
| T |
2361581 |
tcac |
2361584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 2348287 - 2348349
Alignment:
| Q |
88 |
ctaatcgtaactcaatccgataatcttagccgtggtaattttcaaattccaaaacaacactta |
150 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||| ||| ||||||||||||| |
|
|
| T |
2348287 |
ctaatcgtaactcaatccgataatcttttcgatggtgattttcaatttcgaaaacaacactta |
2348349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 370 - 761
Target Start/End: Complemental strand, 5806395 - 5806010
Alignment:
| Q |
370 |
agctacaatggatttagatttaagcagtttaataaacgctacaacaattgcactcctaatttctctaattcccctatgtttatttctatttggactctca |
469 |
Q |
| |
|
||||| ||||||||||| | ||| ||| ||||||| || ||| || || |||||||||||| ||| ||| | |||||| ||||||||| |||| |
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|
| T |
5806395 |
agctaaaatggatttagttctaaacagcctaataaatgccacaccatttacactcctaatttttcttatttcactatgt------ctatttggattctct |
5806302 |
T |
|
| Q |
470 |
aaattttctaacagcaaaaacaaagaagcacccatagctaaaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccaca |
569 |
Q |
| |
|
|||||| || | |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| | |
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|
| T |
5806301 |
aaatttgctcatagcaaaaacaaagaggcaccaatagccaaaggtgcatggccaatacttggtcacctcccaattttttgtggcacacaagcaccccata |
5806202 |
T |
|
| Q |
570 |
gagttttaggtccattagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaagga |
669 |
Q |
| |
|
|| | |||||| | ||| ||||||| |||||||||||||||| |||||||||||| |||||||||| ||| |||| |||||||||||||| || ||||| |
|
|
| T |
5806201 |
gaatcttaggtgccctaggtgataaacatggaccaatattcaccatcaagcttggtcctaaacatgccttagtactcaacaattgggaaatggctaagga |
5806102 |
T |
|
| Q |
670 |
atgtttcactacacacgacatggttgtttcgtctcgtcccaagctcatttcaaccgaacacttagcctatggaggagccgtatttggctttg |
761 |
Q |
| |
|
||||||||||||| | || ||| | |||||||||||||| ||||| || |||| ||||||||||| ||| ||||||| | |||||||||| |
|
|
| T |
5806101 |
atgtttcactacaaatgatatgatcgtttcgtctcgtccaaagcttgttgcaactgaacacttagcttataaaggagccatgtttggctttg |
5806010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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