View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18233_low_4 (Length: 640)
Name: NF18233_low_4
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18233_low_4 |
 | |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 611; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 14 - 628
Target Start/End: Complemental strand, 36939702 - 36939088
Alignment:
| Q |
14 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939702 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
36939603 |
T |
|
| Q |
114 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939602 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
36939503 |
T |
|
| Q |
214 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939502 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
36939403 |
T |
|
| Q |
314 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939402 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
36939303 |
T |
|
| Q |
414 |
cccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939302 |
cccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaat |
36939203 |
T |
|
| Q |
514 |
gtctaaactaccatttggcatgtactcatatacaagtaaaagcttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939202 |
gtctaaactaccatttggcatgtactcatatacaagtaaaagcttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttg |
36939103 |
T |
|
| Q |
614 |
ctaatagttgttact |
628 |
Q |
| |
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|||||| |||||||| |
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| T |
36939102 |
ctaataattgttact |
36939088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Original strand, 36941422 - 36942020
Alignment:
| Q |
14 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
36941422 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
36941521 |
T |
|
| Q |
114 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
213 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36941522 |
aaacccattccacaatgtttatttcattttcttgagcattaa------ttattggttttcttccacaagctatctctaaagcaacaattccaaaactata |
36941615 |
T |
|
| Q |
214 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
313 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
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| T |
36941616 |
cacatcggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatga |
36941715 |
T |
|
| Q |
314 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941716 |
tccacaaaccttgctaaaccgaaatctccaagttttgcgttaaattctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
36941815 |
T |
|
| Q |
414 |
cccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaat |
513 |
Q |
| |
|
|||||||||||||||| || |||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
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|
| T |
36941816 |
cccattcttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaacaccccatttcaacaaactttgtttcttgaaaagatgaat |
36941915 |
T |
|
| Q |
514 |
gtctaaactaccatttggcatgtactcatatacaagtaaaagcttttttctttcatgacaccaaccaatcaattgcactagatttctatgccttaatttg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36941916 |
gtctaaactaccatttggcatgtactcatacacaagcaagagttttttcctttgatgacaccaaccaatcaattgcactagatttctatgccttaatttg |
36942015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 36934535 - 36934468
Alignment:
| Q |
365 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaata |
432 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||| | ||||||| |||||||||||| |||||||| |
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|
| T |
36934535 |
tccaacattatgttgcttgattttatgtccctatgaatcacacatttttcccattcttcctgcaaata |
36934468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 462
Target Start/End: Complemental strand, 36949613 - 36949483
Alignment:
| Q |
332 |
ccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaat |
431 |
Q |
| |
|
|||||||||||||| |||| ||| || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| | |
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|
| T |
36949613 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36949514 |
T |
|
| Q |
432 |
ataacagtgcagaagccaagcctctagctat |
462 |
Q |
| |
|
| || | ||| || ||||| ||||||||||| |
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|
| T |
36949513 |
acaataatgccgaggccaaacctctagctat |
36949483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 462
Target Start/End: Complemental strand, 36959747 - 36959617
Alignment:
| Q |
332 |
ccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaat |
431 |
Q |
| |
|
|||||||||||||| |||| ||| || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| | |
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|
| T |
36959747 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36959648 |
T |
|
| Q |
432 |
ataacagtgcagaagccaagcctctagctat |
462 |
Q |
| |
|
| || | ||| || ||||| ||||||||||| |
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|
| T |
36959647 |
acaataatgccgaggccaaacctctagctat |
36959617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 47871658 - 47871573
Alignment:
| Q |
365 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataacagtgcagaagccaa |
450 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||| |||| ||| |||||||| |
|
|
| T |
47871658 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
47871573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 22912767 - 22912827
Alignment:
| Q |
377 |
ttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataaca |
437 |
Q |
| |
|
||||| ||||| ||||||||||| | |||| |||||||||||||||||| ||||| |||| |
|
|
| T |
22912767 |
ttactagctttaatgtctctatgaataacaacttgttcccattcttcatgtaaataaaaca |
22912827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 582
Target Start/End: Original strand, 19153 - 19222
Alignment:
| Q |
513 |
tgtctaaactaccatttggcatgtactcatatacaagtaaaagcttttttctttcatgacaccaaccaat |
582 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||||| | ||||| ||| ||||||| ||||||||||| |
|
|
| T |
19153 |
tgtctaaacttccatttggcatgaactcataaacaaggagaagctctttactttcatagcaccaaccaat |
19222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
182 |
gctatctctaaagcaacaataccaaaactatacacgtctgtttctttactagctcttcct |
241 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||| ||| | |||||||||||| |||||| |
|
|
| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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