View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18233_low_5 (Length: 484)
Name: NF18233_low_5
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18233_low_5 |
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| [»] scaffold0576 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Complemental strand, 15329314 - 15328857
Alignment:
| Q |
14 |
gaaagacgaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaatgtagaacaaaattaaaggcgaaaa |
113 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
15329314 |
gaaagaagaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaacgtagaacaaaattaaaggcaaaaa |
15329215 |
T |
|
| Q |
114 |
gagccctttcagcacgatagat--gcaacctcgatgttggttgttgtcacccaagccgactctacgacaaatggatgaataaccaacattaacactacaa |
211 |
Q |
| |
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|||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |
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| T |
15329214 |
aagccctttcagcacgaaagatatgcaaccttgatattggttgttgtcacccaagccgactctacaacagatggatgaacaaccaacattaacactacaa |
15329115 |
T |
|
| Q |
212 |
aggatgaaagtgcagtgagtgtcaccgtcaaggaaacaaatggtatgaaaaatgagtgaaaaaccaacacttggacaaatggtggagttgtgaacgtcac |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15329114 |
aggatgaaagtgcagtgagtgtcaccgtcaaggaagcaaatggtatgaaaaatgagtgaaaaaccagcacttggacaaatggtggagttgtgaacgtcac |
15329015 |
T |
|
| Q |
312 |
tggtgacagacttgacctaactttagttagagagagtgacgaaaaatattttatagttgttgtatttattt--------atttgcattgttttgcgtaga |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
15329014 |
tggtgacagacttgacctaactttagttagagagagtgacgaaaaatattttatagctgttgtatttatttatttatttatttgcattgttttgcgtaga |
15328915 |
T |
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| Q |
404 |
gttgcaatatatagtactaacaaatgctttagaatccgtcctcgaacttagttggtat |
461 |
Q |
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| T |
15328914 |
gttgcaatatatagtactaacaaatgctttagaattcgtcctcgaacttagttggtat |
15328857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Complemental strand, 15365480 - 15365027
Alignment:
| Q |
14 |
gaaagacgaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaatgtagaacaaaattaaaggcgaaaa |
113 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
15365480 |
gaaagactaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaacgtagaacaaaattaaaggtgaaaa |
15365381 |
T |
|
| Q |
114 |
gagccctttcagcacgatagatgcaacctcgatgttggttgttgtcacccaagccgactctacgacaaatggatgaataaccaacattaacactacaaag |
213 |
Q |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||| |
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| T |
15365380 |
aaaccctttcagcacgatagatgcaacctcgatattggttgttgtcacccaagccgactctacgacagatggatgaacaacaaccattaacactacaaag |
15365281 |
T |
|
| Q |
214 |
gatgaaagtgcagtgagtgtcaccgtcaaggaaacaaatggtatgaaaaatgagtgaaaaaccaacacttggacaaatggtggagttgtgaacgtcactg |
313 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
15365280 |
gatgaaagtgcagtgagtgtcaccgtcaaggaagccaatggtatgaaaaatgagtgaaaaaccaacacttgggcaaatggtggagttttgaacgtcactg |
15365181 |
T |
|
| Q |
314 |
gtgacagacttgacctaactttagttagagagagtgacgaaaaatattttatagttgttg--------tatttatttatttgcattgttttgcgtagagt |
405 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15365180 |
gtgacggacttgacgtaactttagttag--agagtgacgaaaaatattttatagttgttgtatttatttatttatttatttgcattgttttgcgtagagt |
15365083 |
T |
|
| Q |
406 |
tgcaatatatagtactaacaaatgctttagaatccgtcctcgaacttagttggtat |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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|
| T |
15365082 |
tgcaatatatagtactaacaaatgctttagaattcgtcctcgaactcagttagtat |
15365027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Complemental strand, 10251 - 9798
Alignment:
| Q |
14 |
gaaagacgaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaatgtagaacaaaattaaaggcgaaaa |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
10251 |
gaaagactaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaacgtagaacaaaattaaaggtgaaaa |
10152 |
T |
|
| Q |
114 |
gagccctttcagcacgatagatgcaacctcgatgttggttgttgtcacccaagccgactctacgacaaatggatgaataaccaacattaacactacaaag |
213 |
Q |
| |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||| |
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| T |
10151 |
aaaccctttcagcacgatagatgcaacctcgatattggttgttgtcacccaagccgactctacgacagatggatgaacaacaaccattaacactacaaag |
10052 |
T |
|
| Q |
214 |
gatgaaagtgcagtgagtgtcaccgtcaaggaaacaaatggtatgaaaaatgagtgaaaaaccaacacttggacaaatggtggagttgtgaacgtcactg |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
10051 |
gatgaaagtgcagtgagtgtcaccgtcaaggaagccaatggtatgaaaaatgagtgaaaaaccaacacttgggcaaatggtggagttttgaacgtcactg |
9952 |
T |
|
| Q |
314 |
gtgacagacttgacctaactttagttagagagagtgacgaaaaatattttatagttgttg--------tatttatttatttgcattgttttgcgtagagt |
405 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9951 |
gtgacggacttgacgtaactttagttag--agagtgacgaaaaatattttatagttgttgtatttatttatttatttatttgcattgttttgcgtagagt |
9854 |
T |
|
| Q |
406 |
tgcaatatatagtactaacaaatgctttagaatccgtcctcgaacttagttggtat |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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|
| T |
9853 |
tgcaatatatagtactaacaaatgctttagaattcgtcctcgaactcagttagtat |
9798 |
T |
|
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