View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18233_low_7 (Length: 383)
Name: NF18233_low_7
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18233_low_7 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 8894130 - 8894496
Alignment:
| Q |
1 |
atggtttcaatgtaagccttgtaaaccatgtttaaaccaaacatctccgatatttaacccctcaaaatcatcaacctacaaaaacatccgttgctcttct |
100 |
Q |
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| T |
8894130 |
atggtttcaatgtaagccttgtaaaccatgtttaaaccaaacatctccgatatttaacccttcaaaatcatcaacctacaaaaacatccgttgctcttct |
8894229 |
T |
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| Q |
101 |
cctatatgtaaatgtggagaaaaaacacgttgctcatctaatcgtaaaaggaaatgtgaatatgaaattagatatttggataggtcagggtcacagggag |
200 |
Q |
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| T |
8894230 |
ccgatatgtaaacgtggagaaaaaacacgttgttcatctaatcgtaaaaggaaatgtgaatatgaaattacatatttggataggtcagggtcacagggag |
8894329 |
T |
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| Q |
201 |
atattagtaaggatactcttactctaaactcaaatgatggctctcctatctcatttccaaaaatcgtgatcggatgtgggcacaagaatagtttgacgac |
300 |
Q |
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| T |
8894330 |
atattagtaaggatactcttactctaaactcaaatgatggctctcctatctcatttccaaaaatcgtgatcggatgtggacacaagaatagtttgacaac |
8894429 |
T |
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| Q |
301 |
tgaggggttagcctctggcataattggttttggacgcggaaatttttcaattgtatcgcagttgggt |
367 |
Q |
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| T |
8894430 |
cgaggggttagcctctggcataattggctttggacgcggaaatttttcaattgtatctcagttgggt |
8894496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 15568 - 15276
Alignment:
| Q |
2 |
tggtttcaatgtaagccttgtaaaccatgtttaaaccaaacatctccgatatttaacccctcaaaatcatcaacctacaaaaacatccgttgctcttctc |
101 |
Q |
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| T |
15568 |
tggtttcaatgtaagccgtgtaaaccatgtttaaaccaaacatctccaatgtttaacccttcaaaatcttcaacctataaaaacattcattgctcttctc |
15469 |
T |
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| Q |
102 |
ctatatgtaaatgtggagaaaaaacacgttgctcatctaatcgtaaaaggaaatgtgaatatgaaattagatatttggataggtcagggtcacagggaga |
201 |
Q |
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| T |
15468 |
ccacatgtaaacgtttcgaaaatagccattgctcttccaatcataaaagaaaatgtgaatataaagtttcatatttatctaagtcaatgtcacaaggaga |
15369 |
T |
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| Q |
202 |
tattagtaaggatactcttactctaaactcaaatgatggctctcctatctcatttccaaaaatcgtgatcggatgtgggcacaagaatagttt |
294 |
Q |
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| T |
15368 |
tgtgggtattgacacactcactttaaactctaacgacggatctcctatctcattttcaagaatagtgataggatgtgggcacaaaaatagttt |
15276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 19573366 - 19573472
Alignment:
| Q |
2 |
tggtttcaatgtaagccttgtaaaccatgtttaaaccaaacatctccgatatttaacccctcaaaatcatcaacctacaaaaacatccgttgctcttctc |
101 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| || || ||| |||| |||||||||||||||||||||| ||| | ||| |||||| |
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| T |
19573366 |
tggtttcaatgtaagccgtgcaaaccatgtttaaaccaaacatcaccaatgtttcacccttcaaaatcatcaacctacaaaaccattccatgcacttctc |
19573465 |
T |
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| Q |
102 |
ctatatg |
108 |
Q |
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| T |
19573466 |
ccatatg |
19573472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 16803883 - 16803783
Alignment:
| Q |
2 |
tggtttcaatgtaagccttgtaaaccatgtttaaaccaaacatctccgatatttaacccctcaaaatcatcaacctacaaaaacatccgttgctcttctc |
101 |
Q |
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| T |
16803883 |
tggtttcaatgtaatccgtgtaaaccatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctc |
16803784 |
T |
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| Q |
102 |
c |
102 |
Q |
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| T |
16803783 |
c |
16803783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 19649653 - 19649559
Alignment:
| Q |
6 |
ttcaatgtaagccttgtaaaccatgtttaaaccaaacatctccgatatttaacccctcaaaatcatcaacctacaaaaacatccgttgctcttct |
100 |
Q |
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||||||||||||||||| ||| ||| | || ||||| |||| |||||||| || ||||||||||||| |||||||| || | |||||||||| |
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| T |
19649653 |
ttcaatgtaagccttgtgaacaatgctacaagcaaaccactcctatatttaatccttcaaaatcatcaagttacaaaaatattccttgctcttct |
19649559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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